CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            PE++D + +         +P+ VL  GPPGTGKT  AR +A+      + V    ++ K+ GE  R++ ++F +A E    +IIF+DE+DS   +R       DSE+    +R +  LL Q+DGFE  K + VI ATNR   LDPAL+   R D  I F  P+ E R +I   +++                M   SG +++ VC +A
Sbjct:  168 PELFDALGIA--------QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 362          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            PE++D + +         +P+ VL  GPPGTGKT  AR +A+      + V    ++ K+ GE  R++ ++F +A E    +IIF+DE+DS   +R       DSE+    +R +  LL Q+DGFE  K + VI ATNR   LDPAL+   R D  I F  P+ E R +I   +++                M   SG +++ VC +A
Sbjct:  171 PELFDALGIA--------QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 365          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 64/185 (34.59%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT CAR +AN+     + V    ++ KY GE  R++ ++F +A       +IF DE+D+   AR  +        +R +  L+ Q+DGF+    + V+ ATNR   LDPAL+   R D  I F LPD E R  I   +A+                    +G +IR VC +A
Sbjct:  209 PKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMA-RTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEA 392          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 69/186 (37.10%), Postives = 95/186 (51.08%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPGTGKT  AR +A+Q     + V    ++ KY GES RL+ ++F+ A +     IIF+DE+D+    R SE   A R   R L  LL Q+DGF+   +V +I ATNR   LDPAL+   R D  I   LP+ + R +I    A    KH                +G D+ +VC +A
Sbjct:  167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKH-GEIDYEAIVKLSDGFNGADLGNVCTEA 350          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YEJJ_SCHPO (Uncharacterized AAA domain-containing protein C31G5.19 OS=Schizosaccharomyces pombe GN=SPAC31G5.19 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 68/194 (35.05%), Postives = 94/194 (48.45%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMS----GRDIRDVCQQA 605
            +F    PR VLF GPPGTGKT  AR +A         V   +      +SK+ GE+ER L  +F  A      +IIF DE+D  A  R S+  +    I+S LL  +DG E   +V++I ATNR   +DPAL    RFD    F LPD + R++I   + ++                S    G D+R +C +A
Sbjct:  294 RFNMQPPRGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKST-QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEA 486          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494
            + +L  GPPG GKT  AR +A +     + +    + SKY G+ E+L+  +F++A  +   +IIF+DEVDS    R S  HEA+RR+ +  L + DG     +  ++VV+AATNR Q+LD A + RF   +   LP  + R+
Sbjct:  528 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPGVQTRE 668          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 62/185 (33.51%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ +L  GPPGTGKT CAR +AN+     + V    ++ KY GE  R++ ++F +A       IIF DE+D+   AR  +        +R +  L+ Q+DGF+    + V+ ATNR   LDPAL+   R D  + F LPD E R  I   ++K                    +G ++R VC +A
Sbjct:  243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA-RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 426          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 65/186 (34.95%), Postives = 95/186 (51.08%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT  AR +AN+     + V    ++ KY GE  R++ ++F +A       I+F DEVD+   AR  +     +E  R +L + + Q+DGF+    + V+ ATNR   LDPAL+   R D  + FGLPD E+R +I   + +                    +G DIR VC +A
Sbjct:  201 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI-VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEA 384          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 65/186 (34.95%), Postives = 95/186 (51.08%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT  AR +AN+     + V    ++ KY GE  R++ ++F +A       I+F DEVD+   AR  +     +E  R +L + + Q+DGF+    + V+ ATNR   LDPAL+   R D  + FGLPD E+R +I   + +                    +G DIR VC +A
Sbjct:  202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI-VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEA 385          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 61/145 (42.07%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            P+ VL  GPPGTGKT   + +AN      + V     + KY GE  R++  VF LA E    +I+F+DEVDS A  R      A R   R+L  LL Q+DGF+    V VI ATNR   +DPAL+   R D  I F LPD   ++
Sbjct:  168 PQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLARE-KAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKR 311          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS8_MANSE1.561e-2033.6526S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_DROME1.561e-2033.6526S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS7_RAT1.561e-2034.5926S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS10_BOVIN1.561e-2037.1026S protease regulatory subunit S10B OS=Bos taurus... [more]
YEJJ_SCHPO2.039e-2035.05Uncharacterized AAA domain-containing protein C31G... [more]
SPAST_DROVI2.039e-2037.32Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
PRS7_YEAST2.039e-2033.5126S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7_PRUPE2.039e-2034.9526S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7A_ARATH2.039e-2034.9526S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS6B_ENCCU2.039e-2042.0726S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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