CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            +P+ VL  GPPGTGKT  AR +A+      + V    ++ K+ GE  R++ ++F +A E    +IIF+DE+DS   +R       DSE+    +R +  LL Q+DGFE  K + VI ATNR   LD AL+   R D  I F  P+ E R +I   +++                M   SG +++ VC +A
Sbjct:  182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            +P+ VL  GPPGTGKT  AR +A+      + V    ++ K+ GE  R++ ++F +A E    +IIF+DE+DS   +R       DSE+    +R +  LL Q+DGFE  K + VI ATNR   LD AL+   R D  I F  P+ E R +I   +++                M   SG +++ VC +A
Sbjct:  182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            +P+ VL  GPPGTGKT  AR +A+      + V    ++ K+ GE  R++ ++F +A E    +IIF+DE+DS   +R       DSE+    +R +  LL Q+DGFE  K + VI ATNR   LD AL+   R D  I F  P+ E R +I   +++                M   SG +++ VC +A
Sbjct:  182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 67/209 (32.06%), Postives = 103/209 (49.28%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            PE+++ + +         +P+ VL  GPPGTGKT  AR +A+      + V    ++ KY GE  R++ ++F +A E    +IIF+DE+DS   +R        DSE+    +R +  LL Q+DGFE  K + V+  TNR   LDPAL+   R D  I F  P    R +I   +++                M   SG +++ VC +A
Sbjct:  168 PELFESLGIA--------QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMARE-HAPSIIFMDEIDSIGSSRGESGSGGGDSEV----QRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEA 363          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            +P+ VL  GPPGTGKT  AR +A+      + V    ++ K+ GE  R++ ++F +A E    +IIF+DE+DS   +R       DSE+    +R +  LL Q+DGFE  K + VI ATNR   LD AL+   R D  I F  P+ E R +I   +++                M   SG +++ VC +A
Sbjct:  182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 63/204 (30.88%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE+Y+++ ++         P+ V+  G PGTGKT  A+ +ANQ     + +    ++ KY G+  RL  ++F +A E    +I+F+DE+D+    R   +S      +R +  LL Q+DGF+    V VI ATN+ + LDPALI   R D  I F  PD   +++I   +                     +SG DI+ +C +A
Sbjct:  205 PELYEEMGIKP--------PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE-NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEA 399          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 62/204 (30.39%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE Y+++ +          P+ V+  G PGTGKT  A+ +ANQ     + +    ++ KY G+  +++ ++F +A E    +I+F+DE+D+    R   +S      +R +  LL Q+DGF+    V V+ ATNR + LDPALI   R D  I F LPD + ++ I   +                     +SG DI+ +C +A
Sbjct:  211 PEYYEEMGIRP--------PKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEE-NAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEA 405          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT   + IA Q+G     +    + SK+ GE E+++  +F++A      A+IF+DE+DS    R    HE++RRI +  L Q+DG     D +++V+ ATNR Q++D A   R    +   LP+   R++I
Sbjct:  416 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVA-RCHQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 558          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 53/146 (36.30%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNG--AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PR VL  GPPG GKT   R +A + G  L+ V    +     GE+E  + ++F  A EL +    ++FLDEVD+    R         R+++ +L  +DG  +D++VVV+ +TNR   LDPAL    RFD  +  G P    R+ I
Sbjct:  234 PRGVLLAGPPGVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRRPTLLFLDEVDALCPRRGGPHQAPESRVVAQVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLRQRKAI 379          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 62/172 (36.05%), Postives = 95/172 (55.23%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515
            +PE +D + +E         P  VL  GPPGTGKT  A+ +ANQ     + +    ++ K+ GE  RL+  +F LA E  + AIIF+DE+D+ A  R DS+       +R +  LL ++DGF++   + +IAATNR   LD A++   RFD +I    P+ + R+ I   +A
Sbjct:  174 NPEKFDAVGVEP--------PSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELA-EQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHA 336          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS8_PIG3.846e-1934.7426S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE3.846e-1934.7426S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN3.846e-1934.7426S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_DICDI3.846e-1932.0626S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS8_BOVIN3.846e-1934.7426S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS4_YEAST3.846e-1930.8826S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_CAEEL3.846e-1930.39Probable 26S protease regulatory subunit 4 OS=Caen... [more]
FIGL1_XENTR3.846e-1936.11Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
SPA5L_BOVIN5.023e-1936.30Spermatogenesis-associated protein 5-like protein ... [more]
PSMR1_HALSA5.023e-1936.05Proteasome-activating nucleotidase 1 OS=Halobacter... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
back to top