CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 +P+ VL GPPGTGKT AR +A+ + V ++ K+ GE R++ ++F +A E +IIF+DE+DS +R DSE+ +R + LL Q+DGFE K + VI ATNR LD AL+ R D I F P+ E R +I +++ M SG +++ VC +A Sbjct: 182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 +P+ VL GPPGTGKT AR +A+ + V ++ K+ GE R++ ++F +A E +IIF+DE+DS +R DSE+ +R + LL Q+DGFE K + VI ATNR LD AL+ R D I F P+ E R +I +++ M SG +++ VC +A Sbjct: 182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 +P+ VL GPPGTGKT AR +A+ + V ++ K+ GE R++ ++F +A E +IIF+DE+DS +R DSE+ +R + LL Q+DGFE K + VI ATNR LD AL+ R D I F P+ E R +I +++ M SG +++ VC +A Sbjct: 182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 67/209 (32.06%), Postives = 103/209 (49.28%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 PE+++ + + +P+ VL GPPGTGKT AR +A+ + V ++ KY GE R++ ++F +A E +IIF+DE+DS +R DSE+ +R + LL Q+DGFE K + V+ TNR LDPAL+ R D I F P R +I +++ M SG +++ VC +A Sbjct: 168 PELFESLGIA--------QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMARE-HAPSIIFMDEIDSIGSSRGESGSGGGDSEV----QRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEA 363
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 +P+ VL GPPGTGKT AR +A+ + V ++ K+ GE R++ ++F +A E +IIF+DE+DS +R DSE+ +R + LL Q+DGFE K + VI ATNR LD AL+ R D I F P+ E R +I +++ M SG +++ VC +A Sbjct: 182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 63/204 (30.88%), Postives = 101/204 (49.51%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE+Y+++ ++ P+ V+ G PGTGKT A+ +ANQ + + ++ KY G+ RL ++F +A E +I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATN+ + LDPALI R D I F PD +++I + +SG DI+ +C +A Sbjct: 205 PELYEEMGIKP--------PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE-NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEA 399
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 62/204 (30.39%), Postives = 101/204 (49.51%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE Y+++ + P+ V+ G PGTGKT A+ +ANQ + + ++ KY G+ +++ ++F +A E +I+F+DE+D+ R +S +R + LL Q+DGF+ V V+ ATNR + LDPALI R D I F LPD + ++ I + +SG DI+ +C +A Sbjct: 211 PEYYEEMGIRP--------PKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEE-NAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEA 405
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 P+ +L GPPGTGKT + IA Q+G + + SK+ GE E+++ +F++A A+IF+DE+DS R HE++RRI + L Q+DG D +++V+ ATNR Q++D A R + LP+ R++I Sbjct: 416 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVA-RCHQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 558
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19 Identity = 53/146 (36.30%), Postives = 77/146 (52.74%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNG--AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500 PR VL GPPG GKT R +A + G L+ V + GE+E + ++F A EL + ++FLDEVD+ R R+++ +L +DG +D++VVV+ +TNR LDPAL RFD + G P R+ I Sbjct: 234 PRGVLLAGPPGVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRRPTLLFLDEVDALCPRRGGPHQAPESRVVAQVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLRQRKAI 379
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19 Identity = 62/172 (36.05%), Postives = 95/172 (55.23%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515 +PE +D + +E P VL GPPGTGKT A+ +ANQ + + ++ K+ GE RL+ +F LA E + AIIF+DE+D+ A R DS+ +R + LL ++DGF++ + +IAATNR LD A++ RFD +I P+ + R+ I +A Sbjct: 174 NPEKFDAVGVEP--------PSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELA-EQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHA 336 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |