CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19 Identity = 69/198 (34.85%), Postives = 94/198 (47.47%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + V + SKY GESE+L+ +F +A IF+DE+DS R SE HEA+RR+ + LL Q+DG + K V+V+AATN D+D AL R + I LP + R E+ K SG DI +VC+ A + I G Sbjct: 238 KGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMA-RFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRRRIEG 434
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19 Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 P+ VL GPPGTGKT AR +A +AGVP + + + G + +F A + IIF+DE+D+ R + + H+ + L+ LL ++DGF ++ +++IAATNR LDPAL+ RFD I PD R+E+ +A++ Sbjct: 199 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKK-NAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARN 351
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL G PGTGKT A+ +A++ + V ++ KY G+ +L+ ++F +A + +IIF+DE+DS A R +E A R R L LL ++DGF++ K + +IAATNR LDPA++ RFD ++ +P E R +I Sbjct: 193 PKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARK-KAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKI 338
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 3 Query: 57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 +FES P+ VL GPPGTGKT AR A Q + + ++ + G+ +L+ F+LA E IIF+DE+D+ R DSE+ +R + LL Q+DGF D + VIAATNR LDPAL+ R D I F LP+ E R I Sbjct: 193 RFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHI 347
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 57/155 (36.77%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQD-KKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 P VL EGPPGTGKT A+ +A +AGVP + + + G + +F A + +IIF+DE+D+ R + + ++ + L+ LL ++DGF+ D V+VIAATNR LDPAL+ RFD + G PD + R+ + +AK+ Sbjct: 226 PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTA-PSIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFQDDGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKN 379
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P VL GPPG GKT A+ IA++ + V +++KY GESER + +VF A + +IF DE D+ A R D ++AT R+++ LL ++DG E+ +V +IAATNR +D A+ R D M+ LP E R EI Sbjct: 600 PAGVLMYGPPGCGKTLLAKAIASECQANFISVKGPELLNKYVGESERAVRQVFQRA-AASSPCVIFFDEFDALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEI 745 HSP 2 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 66/214 (30.84%), Postives = 90/214 (42.06%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF----------------EQDKK----------------------------------VVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 PE+Y + +E PR +L GP G GKT A+ IA + VPL + + S GESE + +FS A + P IIF+DE+D+ A R+S + RRI+S LL +D EQ ++ V+VI ATNR + LD AL RFD I G+PD R +I Sbjct: 239 PEIYSHLGVEP--------PRGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEITSGVSGESEARVRTLFSNAIAQAP--CIIFIDEIDAIAPKRESASKDMERRIVSQLLTCMDSLNYLSSNNSTNEPNEQTEQQQQQQQDIIEVDSQATTTTTASNNNNKQQKNDFKKGHVIVIGATNRPESLDTALRIGGRFDKEICLGIPDQTARCKI 442
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 51/144 (35.42%), Postives = 82/144 (56.94%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 P+ +L GPPGTGKT + IA Q+G + + SK+ GE E+++ +F++A A+IF+DE+DS R HE++RRI + L Q+DG + +++V+ ATNR Q++D A R + LP+ R++I Sbjct: 415 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVA-RCHQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 557
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 59/147 (40.14%), Postives = 79/147 (53.74%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL GPPGTGKT AR A Q + + ++ + G+ +L+ F LA E + IIF+DE+D+ R DSE+ +R + LL Q+DGF D ++ VIAATNR LDPAL+ R D I F P E R I Sbjct: 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 349
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 55/154 (35.71%), Postives = 87/154 (56.49%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 P+ VL GPPGTGKT A+ IA +AGVP + + + G + +F A E + I+F+DE+D+ R + + ++ + L+ LL ++DGFE + +++IAATNR LD AL+ RFD +T +PD + R EI +A++ Sbjct: 206 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARN 358
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 64/183 (34.97%), Postives = 89/183 (48.63%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK---HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ VL GPPGTGKT AR IA +A VP + G+ R + +F A IIF+DE+DS R S +H + ++ LL ++DGF +++ ++VIAATNR DLD AL+ RFD +T PD R +I Y H +G DI ++ QA Sbjct: 234 PKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAP-CIIFIDEIDSVGSKRVSNSIHPYANQTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQA 415 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |