CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 69/198 (34.85%), Postives = 94/198 (47.47%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638
            + VL  GPPGTGKT  A+ +A +       V    + SKY GESE+L+  +F +A        IF+DE+DS    R  SE HEA+RR+ + LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R E+     K                    SG DI +VC+ A      + I G
Sbjct:  238 KGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMA-RFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRRRIEG 434          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ VL  GPPGTGKT  AR +A +AGVP   +     +  + G     +  +F  A +     IIF+DE+D+    R + +   H+   + L+ LL ++DGF  ++ +++IAATNR   LDPAL+   RFD  I    PD   R+E+   +A++
Sbjct:  199 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKK-NAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARN 351          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  G PGTGKT  A+ +A++     + V    ++ KY G+  +L+ ++F +A +    +IIF+DE+DS A  R +E   A R   R L  LL ++DGF++ K + +IAATNR   LDPA++   RFD ++   +P  E R +I
Sbjct:  193 PKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARK-KAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKI 338          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 3
Query:   57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            +FES     P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   F+LA E     IIF+DE+D+    R DSE+      +R +  LL Q+DGF  D  + VIAATNR   LDPAL+   R D  I F LP+ E R  I
Sbjct:  193 RFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHI 347          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 57/155 (36.77%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQD-KKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P  VL EGPPGTGKT  A+ +A +AGVP   +     +  + G     +  +F  A +    +IIF+DE+D+    R + +   ++   + L+ LL ++DGF+ D   V+VIAATNR   LDPAL+   RFD  +  G PD + R+ +   +AK+
Sbjct:  226 PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTA-PSIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFQDDGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKN 379          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P  VL  GPPG GKT  A+ IA++     + V    +++KY GESER + +VF  A    +  +IF DE D+ A  R   D   ++AT R+++ LL ++DG E+  +V +IAATNR   +D A+    R D M+   LP  E R EI
Sbjct:  600 PAGVLMYGPPGCGKTLLAKAIASECQANFISVKGPELLNKYVGESERAVRQVFQRA-AASSPCVIFFDEFDALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEI 745          

HSP 2 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 66/214 (30.84%), Postives = 90/214 (42.06%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF----------------EQDKK----------------------------------VVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            PE+Y  + +E         PR +L  GP G GKT  A+ IA +  VPL  +    + S   GESE  +  +FS A  + P   IIF+DE+D+ A  R+S   +  RRI+S LL  +D                  EQ ++                                  V+VI ATNR + LD AL    RFD  I  G+PD   R +I
Sbjct:  239 PEIYSHLGVEP--------PRGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEITSGVSGESEARVRTLFSNAIAQAP--CIIFIDEIDAIAPKRESASKDMERRIVSQLLTCMDSLNYLSSNNSTNEPNEQTEQQQQQQQDIIEVDSQATTTTTASNNNNKQQKNDFKKGHVIVIGATNRPESLDTALRIGGRFDKEICLGIPDQTARCKI 442          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 51/144 (35.42%), Postives = 82/144 (56.94%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT   + IA Q+G     +    + SK+ GE E+++  +F++A      A+IF+DE+DS    R    HE++RRI +  L Q+DG     + +++V+ ATNR Q++D A   R    +   LP+   R++I
Sbjct:  415 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVA-RCHQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 557          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 59/147 (40.14%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   F LA E  +  IIF+DE+D+    R DSE+      +R +  LL Q+DGF  D ++ VIAATNR   LDPAL+   R D  I F  P  E R  I
Sbjct:  204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 349          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 55/154 (35.71%), Postives = 87/154 (56.49%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ VL  GPPGTGKT  A+ IA +AGVP   +     +  + G     +  +F  A E  +  I+F+DE+D+    R + +   ++   + L+ LL ++DGFE +  +++IAATNR   LD AL+   RFD  +T  +PD + R EI   +A++
Sbjct:  206 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARN 358          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 64/183 (34.97%), Postives = 89/183 (48.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK---HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT  AR IA +A VP  +           G+  R +  +F  A       IIF+DE+DS    R S  +H    + ++ LL ++DGF +++ ++VIAATNR  DLD AL+   RFD  +T   PD   R +I   Y     H                +G DI ++  QA
Sbjct:  234 PKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAP-CIIFIDEIDSVGSKRVSNSIHPYANQTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQA 415          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
KTNA1_SALSA6.560e-1934.85Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
FTSH_BACPF6.560e-1935.71Cell division protease ftsH homolog OS=Bacillus ps... [more]
PSMR_METAC8.567e-1938.10Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6A_DICDI8.567e-1940.3826S protease regulatory subunit 6A homolog OS=Dict... [more]
FTSH_LACLA8.567e-1936.77Cell division protease ftsH homolog OS=Lactococcus... [more]
NVL_DICDI1.119e-1839.46Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
FIGL1_XENLA1.119e-1835.42Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
PRS6A_SOLLC1.461e-1840.1426S protease regulatory subunit 6A homolog OS=Sola... [more]
FTSH_GUITH1.461e-1835.71Cell division protease ftsH homolog OS=Guillardia ... [more]
YME1_CAEEL1.909e-1834.97Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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