CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK----KVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 PR VL GPPGTGKT AR +A +A VP ++ Y G + + ++F+ A + +IIF+DE+D+ R++ R+ L+ LL +DGF +++ VV I ATN + LDPAL RFD I LPD R I Q+ +H Sbjct: 300 PRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARK-QAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRH 453
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ------------DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491 R +L GPPGTGKT A+ +A ++ V ++SKY GESE+L+ +F +A +L + +IIF+DE+DS AR +E++RRI + LL Q D +V+V+ ATN +D A RF + LPD+E R Sbjct: 505 RGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKL-SPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETR 653
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 59/147 (40.14%), Postives = 79/147 (53.74%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMH--EATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL GPPGTGKT AR A Q + + ++ + G+ +L+ F LA E + IIF+DE+D+ R DSE+ +R + LL Q+DGF D ++ VIAATNR LDPAL+ R D I F P E R I Sbjct: 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRI 349
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3 Query: 57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 KFE+ P+ VL GPPGTGKT AR A Q + + ++ + G+ +L+ F+LA E +IIF+DE+D+ R DSE +R + LL Q+DGF+ + +V VIAATNR LDPAL+ R D I F +P+ E R I Sbjct: 211 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 365
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3 Query: 57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 KFE+ P+ VL GPPGTGKT AR A Q + + ++ + G+ +L+ F+LA E +IIF+DE+D+ R DSE +R + LL Q+DGF+ + +V VIAATNR LDPAL+ R D I F +P+ E R I Sbjct: 214 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 368
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3 Query: 57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 KFE+ P+ VL GPPGTGKT AR A Q + + ++ + G+ +L+ F+LA E +IIF+DE+D+ R DSE +R + LL Q+DGF+ + +V VIAATNR LDPAL+ R D I F +P+ E R I Sbjct: 211 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 365
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3 Query: 57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 KFE+ P+ VL GPPGTGKT AR A Q + + ++ + G+ +L+ F+LA E +IIF+DE+D+ R DSE +R + LL Q+DGF+ + +V VIAATNR LDPAL+ R D I F +P+ E R I Sbjct: 195 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 349
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 P+ +L GPPGTGKT A+ IAN+A VP V + + G + +F A+E I+F+DE+D+ R + + ++ + L+ LL ++DGF+++K V+V+ ATNR LD AL+ RFD +T LPD R I +A++ Sbjct: 219 PKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASE-NAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARN 371
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18 Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 3 Query: 84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPD 479 +LF GPPG GKT CA + A + G+PL V L+ ++S Y GE+ + K F A + P ++F DE D+ A R DS H RR+++ LL ID + K +IAATN + LD A+ RFD ++ F P+ Sbjct: 121 MLFCGPPGCGKTLCAEIFAAELGLPLFRVKLDRLISSYLGETATNIRKTFEFARKQP--CVLFFDEFDALARTRDDSGEHNELRRVVNSLLLFIDNMQ--PKGFLIAATNLDRSLDAAIWRRFDEVLWFDRPE 249
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18 Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 3 Query: 60 FESNRP--RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPD 479 F+ NR +L GPPGTGK+ A+ +A +A V ++SK+ GESE+L+ ++F++A E +IIF+DEVD+ R EA+RRI + LL Q++G D + V+V+ ATN LD A+ RF+ I LPD Sbjct: 159 FKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE-NKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPD 300 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |