CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK----KVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR VL  GPPGTGKT  AR +A +A VP  ++        Y G   + + ++F+ A +    +IIF+DE+D+    R++      R+ L+ LL  +DGF +++     VV I ATN  + LDPAL    RFD  I   LPD   R  I  Q+ +H
Sbjct:  300 PRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARK-QAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRH 453          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ------------DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPGTGKT  A+ +A ++      V    ++SKY GESE+L+  +F +A +L + +IIF+DE+DS   AR    +E++RRI + LL Q                  D +V+V+ ATN    +D A   RF   +   LPD+E R
Sbjct:  505 RGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKL-SPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETR 653          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 59/147 (40.14%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMH--EATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   F LA E  +  IIF+DE+D+    R DSE+      +R +  LL Q+DGF  D ++ VIAATNR   LDPAL+   R D  I F  P  E R  I
Sbjct:  204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRI 349          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            KFE+     P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   F+LA E    +IIF+DE+D+    R DSE       +R +  LL Q+DGF+ + +V VIAATNR   LDPAL+   R D  I F +P+ E R  I
Sbjct:  211 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 365          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            KFE+     P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   F+LA E    +IIF+DE+D+    R DSE       +R +  LL Q+DGF+ + +V VIAATNR   LDPAL+   R D  I F +P+ E R  I
Sbjct:  214 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 368          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            KFE+     P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   F+LA E    +IIF+DE+D+    R DSE       +R +  LL Q+DGF+ + +V VIAATNR   LDPAL+   R D  I F +P+ E R  I
Sbjct:  211 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 365          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            KFE+     P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   F+LA E    +IIF+DE+D+    R DSE       +R +  LL Q+DGF+ + +V VIAATNR   LDPAL+   R D  I F +P+ E R  I
Sbjct:  195 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 349          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ +L  GPPGTGKT  A+ IAN+A VP   V     +  + G     +  +F  A+E     I+F+DE+D+    R + +   ++   + L+ LL ++DGF+++K V+V+ ATNR   LD AL+   RFD  +T  LPD   R  I   +A++
Sbjct:  219 PKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASE-NAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARN 371          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPD 479
            +LF GPPG GKT CA + A + G+PL  V L+ ++S Y GE+   + K F  A + P   ++F DE D+ A  R DS  H   RR+++ LL  ID  +   K  +IAATN  + LD A+  RFD ++ F  P+
Sbjct:  121 MLFCGPPGCGKTLCAEIFAAELGLPLFRVKLDRLISSYLGETATNIRKTFEFARKQP--CVLFFDEFDALARTRDDSGEHNELRRVVNSLLLFIDNMQ--PKGFLIAATNLDRSLDAAIWRRFDEVLWFDRPE 249          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 3
Query:   60 FESNRP--RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPD 479
            F+ NR     +L  GPPGTGK+  A+ +A +A      V    ++SK+ GESE+L+ ++F++A E    +IIF+DEVD+    R     EA+RRI + LL Q++G   D + V+V+ ATN    LD A+  RF+  I   LPD
Sbjct:  159 FKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE-NKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPD 300          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
YME1_SCHPO3.256e-1837.42Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
TBP6_YEAST3.256e-1836.67Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
PS6AB_ARATH3.256e-1840.1426S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6A_RAT3.256e-1839.7426S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_MOUSE3.256e-1839.7426S protease regulatory subunit 6A OS=Mus musculus... [more]
PRS6A_HUMAN3.256e-1839.7426S protease regulatory subunit 6A OS=Homo sapiens... [more]
PR6AA_XENLA3.256e-1839.7426S protease regulatory subunit 6A-A OS=Xenopus la... [more]
FTSH_ODOSI3.256e-1835.71Cell division protease ftsH homolog OS=Odontella s... [more]
Y4KL_RHISN4.252e-1840.60Uncharacterized AAA family ATPase y4kL OS=Rhizobiu... [more]
VPS4_YEAST4.252e-1839.86Vacuolar protein sorting-associated protein 4 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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