CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  A+ +A +     + V    +++K+ GE  RL+ ++F LA E    +I+F+DE+D+ A  R    +      +R +  LL ++DGF+    V VIAATNR   +DPA++   RFD +I   LP    R EI
Sbjct:  173 PKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLARE-KAPSILFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEI 318          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 54/153 (35.29%), Postives = 87/153 (56.86%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPGTGKT  A+ IA +AGVP   +     +  + G        +F+ A +  +  I+F+DE+D+    R + +   ++   + L+ +L ++DGF  +  V+VIAATNR + LD AL+   RFD  ++ GLPD   R+EI   +++
Sbjct:  257 PKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKA-KANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSR 408          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ VL  GPPGTGKT  A+ IA +AGVP   +     +  + G     +  +F  A E     +IF+DE+D+    R + +   ++   + L+ LL ++DGFE +  +++IAATNR   LD AL+   RFD  +    PD+  R+EI   +A++
Sbjct:  205 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARN 357          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            +L  GPPGTGK+  A+ +A +AG     +    ++SK+ GESERL+ ++F +A E    +IIF+DE+DS   +R     E++RRI +  L Q++G  +D+  V+V+ ATN    LD A+  RF+  I   LP+   R
Sbjct:  165 ILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMARE-QKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHAR 300          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 64/209 (30.62%), Postives = 103/209 (49.28%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            PE+++ + +         +P+ V+  GPPGTGKT  AR +A+      + V    ++ KY GE  +++ ++F +A E    +IIF+DE+DS    R        DSE+    +R +  LL Q+DGFE  + + +I ATNR   LDPAL+   R D  I F  P+   R +I   +++                +   SG +I+  C +A
Sbjct:  179 PELFESLGIA--------QPKGVIMYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMARE-HAPSIIFMDEIDSIGSTRTEGGKGGGDSEV----QRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEA 374          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 63/156 (40.38%), Postives = 85/156 (54.49%), Query Frame = 3
Query:   57 KFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            KFE+     P+ VL  GPPGTGKT  AR  A Q     + +    ++  + G+  +L+   FSLA E    +IIF+DE+D+    R DSE       +R +  LL Q+DGF+   +V VIAATNR   LDPAL+   R D  I F +P+ E R  I
Sbjct:  176 KFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKE-KAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI 330          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 3
Query:   42 LETRCKFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            L+   K+ES     P+ VL  GPPGTGKT  AR  A +AGV   ++        Y G   + +  +F+ A      AIIF+DE+D+    R+ +     ++ L+ LL ++DGF Q   +++I ATN  + LD AL    RFD ++   LPD   R +I   + K
Sbjct:  300 LKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAP-AIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMK 462          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = 3
Query:   42 LETRCKFES---NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            L+  C++++     P+ VL  GPPGTGKT  AR +A +AGVP   +     +  + G     +  +F  A +  +  IIF+DE+D+    R + +   H+   + L+ LL ++DGF     V++IAATNR   LDPAL+   RFD  I    PD   R+ +   ++K
Sbjct:  182 LQNPCRYQTLGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQ-NSPCIIFVDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSK 347          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT  AR IA +A VP   +     +  + G     +  +F  A +     +IF+DE+D+    R + +   H+   + L+ +L ++DGF  +  V+VIAATNR   LDPAL    RFD  +  GLPD + R++I
Sbjct:  184 PKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKK-NAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQI 329          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 63/194 (32.47%), Postives = 90/194 (46.39%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD----SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH-----XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            K  +  PR  +  GPPGTGKT  A+  A +AGVP  +V     +  + G     +  +F  A E    +I+F+DE+D+   AR     S  ++     L+ +L ++DGF     VVV+A TNR   LD AL+   RFD  I    P+ E R+ I A +  H                     SG DI +VC +A
Sbjct:  375 KMGAKIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARE-NAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEA 567          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PSMR_AERPE4.252e-1838.10Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
FTSH6_ARATH4.252e-1835.29Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH1_SYNY34.252e-1835.06Cell division protease ftsH homolog 1 OS=Synechocy... [more]
VPS4_SCHPO5.553e-1838.69Suppressor protein of bem1/bed5 double mutants OS=... [more]
PRS8_NAEFO5.553e-1830.6226S protease regulatory subunit 8 homolog OS=Naegl... [more]
PR6AB_XENLA5.553e-1840.3826S protease regulatory subunit 6A-B OS=Xenopus la... [more]
YME1_YEAST7.253e-1834.76Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
FTSH_MYCLE7.253e-1834.13Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH1_HAEIN7.253e-1836.73Cell division protease ftsH homolog 1 OS=Haemophil... [more]
RCA1_YEAST9.472e-1832.47Mitochondrial respiratory chain complexes assembly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
back to top