CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 65/208 (31.25%), Postives = 96/208 (46.15%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD----SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +P+ Y+D+ + P+ L GPPGTGKT A+ A ++ VP + + M + G + +F A + +IIF+DE+D+ AR S ++ L+ LL ++DGF VVV+A TNR LD AL+ RFD IT PD + R +I Y K H +G DI +VC +A Sbjct: 348 NPKKYEDLGAKI--------PKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 546
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL GPPGTGKT A+ IA +AGVP + + + G + +F A E I+F+DE+D+ R + + ++ + L+ LL ++DGFE + ++VIAATNR LD AL+ RFD ++ +PD R EI Sbjct: 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEI 392
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEAT----RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 R +L GPPG KT+ A+ AN A + + S Y GE E LL F A L + +IIF DE D A R E + R+LS LL ++DG E+ K ++V+AATNR +D AL+ RFD ++ PD E R EI + ++ Sbjct: 321 RGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRA-RLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRN 473 HSP 2 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 67/222 (30.18%), Postives = 104/222 (46.85%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK---KVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMS---GRDIRDVCQQA-----ERSWASKIIRGQITKDGEQACLPPLQEYI 692 PR +L GPPGTGKTS R + + L+ + V + GESE++L + F+ A+ ++IF+DE+D RD+ E RI S L +D + +VVV+A+TNR +DPAL RFD+++ P+ E+R +I Y K + G D+ +C++A +RS S I+ Q K + P + I Sbjct: 56 PRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDAR-REQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGADLEALCREATISASKRSSDSLILTSQDFKIAKSVVGPSINRGI 276
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQY 512 P+ +L GPPGTGKT AR +A +A VP Y + G + +F A + +IF+DE+DS R + MH +R+ + LL ++DGF+ ++ V++I ATN + LD ALI RFD +T PD + R EI Y Sbjct: 314 PKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREA-KANAPCVIFIDELDSVGGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWY 461
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 52/153 (33.99%), Postives = 85/153 (55.56%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ +L GPPGTGKT A+ IA +A VP + + + G + +F + ++ IIF+DE+D+ R + + H+ + L+ +L ++DGF+ ++ +++IAATNR LDPAL+ RFD I LPD R++I + K Sbjct: 185 PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKVAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMK 336
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-ELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500 PR VL G PGTGKT A+ +A ++ VP + + Y G + +F+ A E P+ IIF+DE+D+ A +RD + ++ + L+ LL ++DGF+ V+V+ ATNR LDPAL RFD ++T PD R+ I Sbjct: 362 PRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPS--IIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESI 508
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17 Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515 P+ VL GPPGTGKT A+ IA +AGVP + + + G + +F A E I+F+DE+D+ R + + ++ + L+ LL ++DGFE + V+V+AATNR LD AL+ RFD ++ +PD + R +I +A Sbjct: 260 PKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHA 410
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ +L GPPGTGKT A+ IA +A VP + + + G + +F A + IIF+DE+D+ R + + H+ + L+ +L ++DGF+ ++ V++IAATNR LDPAL+ RFD + LPD R++I Sbjct: 185 PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHARKSAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQI 330
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 62/188 (32.98%), Postives = 89/188 (47.34%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD----SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ L GPPGTGKT A+ A ++GVP + + M + G + +F A + +IIF+DE+D+ AR S ++ L+ LL ++DGF VVV+A TNR LD AL+ RFD IT PD + R +I Y K + +G DI +VC +A Sbjct: 368 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEA 554
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL GPPGTGKT A+ IA +AGVP + + + G + +F A E I+F+DE+D+ R + + ++ + L+ LL ++DGFE + V+V+AATNR LD AL+ RFD ++ +PD + R +I Sbjct: 253 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDI 398 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |