CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 65/208 (31.25%), Postives = 96/208 (46.15%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD----SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            +P+ Y+D+  +         P+  L  GPPGTGKT  A+  A ++ VP + +     M  + G     +  +F  A +    +IIF+DE+D+   AR     S  ++     L+ LL ++DGF     VVV+A TNR   LD AL+   RFD  IT   PD + R +I   Y K     H                +G DI +VC +A
Sbjct:  348 NPKKYEDLGAKI--------PKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 546          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  A+ IA +AGVP   +     +  + G     +  +F  A E     I+F+DE+D+    R + +   ++   + L+ LL ++DGFE +  ++VIAATNR   LD AL+   RFD  ++  +PD   R EI
Sbjct:  247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEI 392          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEAT----RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            R +L  GPPG  KT+ A+  AN A      +    + S Y GE E LL   F  A  L + +IIF DE D  A  R  E    +     R+LS LL ++DG E+ K ++V+AATNR   +D AL+   RFD ++    PD E R EI   + ++
Sbjct:  321 RGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRA-RLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRN 473          

HSP 2 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 67/222 (30.18%), Postives = 104/222 (46.85%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK---KVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMS---GRDIRDVCQQA-----ERSWASKIIRGQITKDGEQACLPPLQEYI 692
            PR +L  GPPGTGKTS  R +  +    L+ +    V   + GESE++L + F+ A+        ++IF+DE+D     RD+   E   RI S L   +D  +      +VVV+A+TNR   +DPAL    RFD+++    P+ E+R +I   Y K                 +   G D+  +C++A     +RS  S I+  Q  K  +    P +   I
Sbjct:   56 PRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDAR-REQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGADLEALCREATISASKRSSDSLILTSQDFKIAKSVVGPSINRGI 276          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQY 512
            P+ +L  GPPGTGKT  AR +A +A VP  Y         + G     +  +F  A +     +IF+DE+DS    R +  MH  +R+ +  LL ++DGF+ ++ V++I ATN  + LD ALI   RFD  +T   PD + R EI   Y
Sbjct:  314 PKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREA-KANAPCVIFIDELDSVGGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWY 461          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 52/153 (33.99%), Postives = 85/153 (55.56%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ +L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F  + ++    IIF+DE+D+    R + +   H+   + L+ +L ++DGF+ ++ +++IAATNR   LDPAL+   RFD  I   LPD   R++I   + K
Sbjct:  185 PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKVAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMK 336          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-ELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PR VL  G PGTGKT  A+ +A ++ VP +       +  Y G     +  +F+ A  E P+  IIF+DE+D+ A +RD +     ++   + L+ LL ++DGF+    V+V+ ATNR   LDPAL    RFD ++T   PD   R+ I
Sbjct:  362 PRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPS--IIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESI 508          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515
            P+ VL  GPPGTGKT  A+ IA +AGVP   +     +  + G     +  +F  A E     I+F+DE+D+    R + +   ++   + L+ LL ++DGFE +  V+V+AATNR   LD AL+   RFD  ++  +PD + R +I   +A
Sbjct:  260 PKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHA 410          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F  A +     IIF+DE+D+    R + +   H+   + L+ +L ++DGF+ ++ V++IAATNR   LDPAL+   RFD  +   LPD   R++I
Sbjct:  185 PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHARKSAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQI 330          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 62/188 (32.98%), Postives = 89/188 (47.34%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD----SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPGTGKT  A+  A ++GVP + +     M  + G     +  +F  A +    +IIF+DE+D+   AR     S  ++     L+ LL ++DGF     VVV+A TNR   LD AL+   RFD  IT   PD + R +I   Y K     +                +G DI +VC +A
Sbjct:  368 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEA 554          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  A+ IA +AGVP   +     +  + G     +  +F  A E     I+F+DE+D+    R + +   ++   + L+ LL ++DGFE +  V+V+AATNR   LD AL+   RFD  ++  +PD + R +I
Sbjct:  253 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDI 398          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
FTSHA_ARATH2.110e-1731.25Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH2_ORYSJ2.110e-1736.73Cell division protease ftsH homolog 2, chloroplast... [more]
CD48B_ARATH2.110e-1737.66Cell division control protein 48 homolog B OS=Arab... [more]
YMEL1_RAT2.756e-1736.91ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
FTSH_BUCBP2.756e-1733.99Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH9_ARATH2.756e-1736.91Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH2_ARATH2.756e-1735.53Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH_BUCAP3.599e-1735.37Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH8_ORYSJ3.599e-1732.98Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH8_ARATH3.599e-1736.05Cell division protease ftsH homolog 8, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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