CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 51/153 (33.33%), Postives = 84/153 (54.90%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPGTGKT  A+ +A +AGVP   +     +  + G     +  +F  A +     I+F+DE+D+    R + +   ++   + L+ LL ++DGFE +  ++++AATNR   LD AL+   RFD  +    PD+  R+EI   +A+
Sbjct:  194 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQA-KANAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHAR 345          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 61/188 (32.45%), Postives = 89/188 (47.34%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD----SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPGTGKT  A+  A ++GVP + +     M  + G     +  +F  A +  + +I+F+DE+D+   AR     S  H+     L+ LL ++DGF     VVV+A TNR   LD AL+   RFD  I+   PD + R +I   Y K                      +G DI +VC +A
Sbjct:  353 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQC-SPSIVFIDEIDAIGRARGRGGFSGGHDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEA 539          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +LF GPPGTGKT  A+ IA    +    V    +++ Y GESE  + +VF  A E     +IF DE+DS A  R ++        RI+S LL ++DG   D   V VI ATNR   LD AL+   RFD ++  G+PD + +Q
Sbjct:  768 ILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARE-AKPCVIFFDEIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQ 908          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLG----KVFSLANELPNGA--IIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR V+  GPPGTGKT  A+ +A +AGVP          S   G  + L+G    +V  L N+    A  IIF+DE+DS    R   +   +    + L+ LL ++DGF     VVV+AATNR   LD AL+   RFD  I   LPD + R+ I   +AK+
Sbjct:  261 PRGVILYGPPGTGKTLLAKAVAGEAGVPFF-------QSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKN 413          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ VL  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F  A +     I+F+DE+D+    R + +   ++   + L+ LL ++DGFE +  V+VIAATNR   LD AL+   RFD  ++  +PD + R  I   +AK+
Sbjct:  206 PKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKD-NAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKN 358          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPL-MYVPLEVVMSKYYGESERLLGKVFSLANELPNG--AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            + +L  GPPG GKT  AR +A + G  + + V    + SK+ G++E+++  +F +A    NG   IIF+DE+DS    R+ +  E +RR+ +  L Q+DG    +D +++VI ATNR ++LD A++ RF   I   +P+   R ++
Sbjct:  212 QGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIAR---NGQPTIIFIDEIDSILCERNEKETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKL 354          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F  + +     IIF+DE+D+    R + +   H+   + L+ +L ++DGF+ ++ +++IAATNR   LDPAL+   RFD  +   LPD   R++I
Sbjct:  185 PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKSAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQI 330          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PR VL  G PGTGKT  A+ +A +A VP +       +  Y G     +  +F+ A +  + +IIF+DE+D+ A +RD       ++   + L+ LL ++DGF+ +  V+V+ ATNR   LDPAL    RFD ++    PD   R+ I
Sbjct:  379 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAARVRDLFARAKK-ESPSIIFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESI 525          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  A+ IA +AGVP   +     +  + G     +  +F  A +     ++F+DE+D+    R + +   ++   + L+ LL ++DGF   D  VVVIAATNR + LD AL+   RFD  ++ GLPD   R+EI
Sbjct:  254 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRA-KASAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEI 400          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 61/160 (38.12%), Postives = 84/160 (52.50%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLG----KVFSLANELPNGA--IIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR V+  GPPGTGKT  A+ +A +AGVP          S   G  + L+G    +V  L N+    A  IIF+DE+DS    R   +   +    + L+ LL ++DGF     VVV+AATNR   LD AL+   RFD  I   LPD + R+ I   +A++
Sbjct:  264 PRGVILYGPPGTGKTLLAKAVAGEAGVPFF-------QSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAEN 416          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
FTSH4_SYNY33.599e-1733.33Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH3_ORYSJ3.599e-1732.45Cell division protease ftsH homolog 3, mitochondri... [more]
PEX6_YEAST4.701e-1740.14Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
FTSH_MYCPN4.701e-1738.75Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FSTH_PORYE4.701e-1735.06Cell division protease ftsH homolog OS=Porphyra ye... [more]
SPAST_BRUMA6.140e-1734.93Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
FTSH_BUCAI8.019e-1734.01Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH7_ORYSJ8.019e-1735.81Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH6_ORYSJ1.047e-1637.84Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_MYCGE1.368e-1638.13Cell division protease ftsH homolog OS=Mycoplasma ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
back to top