CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 51/153 (33.33%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ VL GPPGTGKT A+ +A +AGVP + + + G + +F A + I+F+DE+D+ R + + ++ + L+ LL ++DGFE + ++++AATNR LD AL+ RFD + PD+ R+EI +A+ Sbjct: 194 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQA-KANAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHAR 345
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 61/188 (32.45%), Postives = 89/188 (47.34%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD----SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ L GPPGTGKT A+ A ++GVP + + M + G + +F A + + +I+F+DE+D+ AR S H+ L+ LL ++DGF VVV+A TNR LD AL+ RFD I+ PD + R +I Y K +G DI +VC +A Sbjct: 353 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQC-SPSIVFIDEIDAIGRARGRGGFSGGHDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEA 539
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = 3 Query: 84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494 +LF GPPGTGKT A+ IA + V +++ Y GESE + +VF A E +IF DE+DS A R ++ RI+S LL ++DG D V VI ATNR LD AL+ RFD ++ G+PD + +Q Sbjct: 768 ILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARE-AKPCVIFFDEIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQ 908
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLG----KVFSLANELPNGA--IIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 PR V+ GPPGTGKT A+ +A +AGVP S G + L+G +V L N+ A IIF+DE+DS R + + + L+ LL ++DGF VVV+AATNR LD AL+ RFD I LPD + R+ I +AK+ Sbjct: 261 PRGVILYGPPGTGKTLLAKAVAGEAGVPFF-------QSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKN 413
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 P+ VL GPPGTGKT A+ IA +A VP + + + G + +F A + I+F+DE+D+ R + + ++ + L+ LL ++DGFE + V+VIAATNR LD AL+ RFD ++ +PD + R I +AK+ Sbjct: 206 PKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKD-NAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKN 358
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17 Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPL-MYVPLEVVMSKYYGESERLLGKVFSLANELPNG--AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 + +L GPPG GKT AR +A + G + + V + SK+ G++E+++ +F +A NG IIF+DE+DS R+ + E +RR+ + L Q+DG +D +++VI ATNR ++LD A++ RF I +P+ R ++ Sbjct: 212 QGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIAR---NGQPTIIFIDEIDSILCERNEKETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKL 354
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17 Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ +L GPPGTGKT A+ IA +A VP + + + G + +F + + IIF+DE+D+ R + + H+ + L+ +L ++DGF+ ++ +++IAATNR LDPAL+ RFD + LPD R++I Sbjct: 185 PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKSAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQI 330
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17 Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500 PR VL G PGTGKT A+ +A +A VP + + Y G + +F+ A + + +IIF+DE+D+ A +RD ++ + L+ LL ++DGF+ + V+V+ ATNR LDPAL RFD ++ PD R+ I Sbjct: 379 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAARVRDLFARAKK-ESPSIIFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESI 525
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL GPPGTGKT A+ IA +AGVP + + + G + +F A + ++F+DE+D+ R + + ++ + L+ LL ++DGF D VVVIAATNR + LD AL+ RFD ++ GLPD R+EI Sbjct: 254 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRA-KASAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEI 400
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16 Identity = 61/160 (38.12%), Postives = 84/160 (52.50%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLG----KVFSLANELPNGA--IIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 PR V+ GPPGTGKT A+ +A +AGVP S G + L+G +V L N+ A IIF+DE+DS R + + + L+ LL ++DGF VVV+AATNR LD AL+ RFD I LPD + R+ I +A++ Sbjct: 264 PRGVILYGPPGTGKTLLAKAVAGEAGVPFF-------QSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAEN 416 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |