CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 3
Query:   39 ALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            A ET  +   + P+ VL  GPPG  KT  A+ +A ++G+  + V    + +KY GESER + ++F  A      +IIF DE+D+ +  RD     A   +L+ LL +IDG E+ K VV++AATNR  ++D AL+   R D  I  G PD   R EI  +  K
Sbjct:  538 ASETFARLGISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAP-SIIFFDEIDALSPDRDGSSTSAANHVLTSLLNEIDGVEELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTK 698          

HSP 2 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   60 FESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            F  + PR +L  GPPGTGKT   RV+AN +   ++ +    ++SKY GE+E  L  +F+ A +    +IIF+DE+DS A  R + +  E   R+++ LL  +DG     KVVVIAATNR   +DPAL    RFD  +  G+PD + R +I
Sbjct:  274 FGVSPPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY-QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDI 422          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 67/199 (33.67%), Postives = 104/199 (52.26%), Query Frame = 3
Query:   36 IALETRCKFESNR----PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK--KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            + ++ R  FE +R    P+ VL  GPPG GKT  A+  A +AG   + +    +  K+YGES++L   VFSLA +L   +IIF+DE+DSF   R S  HEAT  + +  +   DG + D   +V+++ ATNR QDLD A++ R  +      P+   R++I     ++                   SG D+R++C+ A
Sbjct:  113 LPIQKRHLFEGSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKL-QPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILRRMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDA 310          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 64/166 (38.55%), Postives = 92/166 (55.42%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            PE+++ I +E         P+ VL  GPPGTGKT  A+ +A++     + +     + KY GE  RL+  VF LA E  + +IIF+DE+D+ A  R    +      +R L  LL ++DGFE    V ++AATNR   LDPAL+   RFD  I   LP+ + R+EI
Sbjct:  174 PELFEKIGIEP--------PKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKE-KSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREI 330          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 67/145 (46.21%), Postives = 81/145 (55.86%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            PR VL  GPPGTGKT  A+ +A+      + V     + KY GE  R++  VF LA E    AIIF+DEVD+ A AR      A R   RIL  LL Q+DGF+Q   V VI ATNR   LDPAL+   R D  I F LPD   ++
Sbjct:  194 PRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 337          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 70/214 (32.71%), Postives = 108/214 (50.47%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE--QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKD-GEQACLPPLQEYIES 698
            P+ VL  GPPG GKT  A+  A  +G   + +    +  K+YGES++L   VFSLA ++    IIFLDE+DSF   R S  HEAT  + +  +   DG +  ++ +V+V+ ATNR QD+D A++ R  +    GLP+   R+EI                          SG D++++C+ A        +R Q  K   +Q  L   +E+++S
Sbjct:  129 PKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKI-QPCIIFLDEIDSFLRNRSSMDHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRDYVRKQQMKQIAQQFQLDEEEEHVDS 341          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 72/233 (30.90%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   21 EVYDDIALETRCK--FESNR----PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK--KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQE 686
            ++ D + L  + K  FE++R    P+ VL  GPPG GKT  A+  A +AG   + +    +  K+YGES++L   VFSLA +L   +IIF+DE+DSF   R S  HEAT  + +  +   DG + D   +V+V+ ATNR QDLD A++ R  +      P  + R+ I     K+                   SG D++++C+ A      + +     +  ++  + P+Q+
Sbjct:  102 DLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKL-QPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQ 333          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 72/233 (30.90%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   21 EVYDDIALETRCK--FESNR----PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK--KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQE 686
            ++ D + L  + K  FE++R    P+ VL  GPPG GKT  A+  A +AG   + +    +  K+YGES++L   VFSLA +L   +IIF+DE+DSF   R S  HEAT  + +  +   DG + D   +V+V+ ATNR QDLD A++ R  +      P  + R+ I     K+                   SG D++++C+ A      + +     +  ++  + P+Q+
Sbjct:  102 DLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKL-QPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQ 333          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 72/233 (30.90%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   21 EVYDDIALETRCK--FESNR----PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK--KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQE 686
            ++ D + L  + K  FE++R    P+ VL  GPPG GKT  A+  A +AG   + +    +  K+YGES++L   VFSLA +L   +IIF+DE+DSF   R S  HEAT  + +  +   DG + D   +V+V+ ATNR QDLD A++ R  +      P  + R+ I     K+                   SG D++++C+ A      + +     +  ++  + P+Q+
Sbjct:  102 DLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKL-QPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQ 333          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 76/203 (37.44%), Postives = 97/203 (47.78%), Query Frame = 3
Query:   21 EVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            E+Y  I +E         PR VL  GPPG GKT  A  +A+      + V     + KY GE  R++  VF LA E  + AIIF+DE+D+ A  R      A R   RIL  LL Q+DGF+Q   V VI ATNR   LDPAL+   R D  I F LPD   ++ I +                       +SG DI  +CQ+A
Sbjct:  186 ELYRQIGIEP--------PRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEA 379          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD2_HUMAN (ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 69/168 (41.07%), Postives = 90/168 (53.57%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PEV++        KF+   PR  LF GPPGTGKT  AR +AN+       V   +      +SK+ GESER L  +F  A ++   +IIF DE+D  A  R S   +    I+S LL  +DG +   ++VVI ATNR   +DPAL    RFD    F LPD E R+EI
Sbjct:  449 PEVFE--------KFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQM-RPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKEARKEI 607          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
AFG2_YEAST1.277e-2238.27ATPase family gene 2 protein OS=Saccharomyces cere... [more]
ATD1B_DANRE1.668e-2233.67ATPase family AAA domain-containing protein 1-B OS... [more]
PSMR_METTH2.179e-2238.55Proteasome-activating nucleotidase OS=Methanobacte... [more]
PRS6B_SOLTU2.179e-2246.2126S protease regulatory subunit 6B homolog OS=Sola... [more]
ATD1A_DANRE2.179e-2232.71ATPase family AAA domain-containing protein 1-A OS... [more]
ATAD1_RAT2.179e-2230.90ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE2.179e-2230.90ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN2.179e-2230.90ATPase family AAA domain-containing protein 1 OS=H... [more]
PRS6B_MANSE2.845e-2237.4426S protease regulatory subunit 6B OS=Manduca sext... [more]
ATAD2_HUMAN2.845e-2241.07ATPase family AAA domain-containing protein 2 OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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