CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPGTGKT  AR +A+Q     + V    ++ KY GES RL+ ++F+ A +     IIF+DE+D+    R SE   A R   R L  LL Q+DGF+   +V +I ATNR   LDPAL+   R D  I   LP+ + R +I    A    KH                +G D+R+VC +A
Sbjct:  167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKH-GEIDYEAIVKLSDGFNGADLRNVCTEA 350          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPGTGKT  AR +A+Q     + V    ++ KY GES RL+ ++F+ A +     IIF+DE+D+    R SE   A R   R L  LL Q+DGF+   +V +I ATNR   LDPAL+   R D  I   LP+ + R +I    A    KH                +G D+R+VC +A
Sbjct:  167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKH-GEIDYEAIVKLSDGFNGADLRNVCTEA 350          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPGTGKT  AR +A+Q     + V    ++ KY GES RL+ ++F+ A +     IIF+DE+D+    R SE   A R   R L  LL Q+DGF+   +V +I ATNR   LDPAL+   R D  I   LP+ + R +I    A    KH                +G D+R+VC +A
Sbjct:  167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKH-GEIDYEAIVKLSDGFNGADLRNVCTEA 350          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +F++A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   D +V+V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  374 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETR 512          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK--HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            +PE+++ + +          P+ VL  GPPGTGKT  A+ +A +     + V    ++ K+ GE  +L+  VF LA E  +  IIF+DE+D+ A  R   +    R   R L  LL ++DGF+    V +IAATNR   LDPA++   RFD +I   +PD + R EI   + +  +               M G D++ VC +A
Sbjct:  170 NPELFEKVGIVP--------PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLKGVDLREVAKIAENMVGADLKAVCTEA 364          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK--HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            +PE+++ + +          P+ VL  GPPGTGKT  A+ +A +     + V    ++ K+ GE  +L+  VF LA E  +  IIF+DE+D+ A  R   +    R   R L  LL ++DGF+    V +IAATNR   LDPA++   RFD +I   +PD + R EI   + +  +               M G D++ VC +A
Sbjct:  170 NPELFEKVGIVP--------PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLKNVDLREVAKLAENMVGADLKAVCTEA 364          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE Y+++ ++         P+ V+  GPPGTGKT  A+ +ANQ     + V    ++ KY G+  +L+ ++F +A E    +I+F+DE+D+    R   +S      +R +  LL Q+DGF+    V VI ATNR + LDPALI   R D  I F LPD + ++ I   +                     +SG DI+ +C +A
Sbjct:  208 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 402          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE Y+++ ++         P+ V+  GPPGTGKT  A+ +ANQ     + V    ++ KY G+  +L+ ++F +A E    +I+F+DE+D+    R   +S      +R +  LL Q+DGF+    V VI ATNR + LDPALI   R D  I F LPD + ++ I   +                     +SG DI+ +C +A
Sbjct:  208 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 402          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE Y+++ ++         P+ V+  GPPGTGKT  A+ +ANQ     + V    ++ KY G+  +L+ ++F +A E    +I+F+DE+D+    R   +S      +R +  LL Q+DGF+    V VI ATNR + LDPALI   R D  I F LPD + ++ I   +                     +SG DI+ +C +A
Sbjct:  208 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 402          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE Y+++ ++         P+ V+  GPPGTGKT  A+ +ANQ     + V    ++ KY G+  +L+ ++F +A E    +I+F+DE+D+    R   +S      +R +  LL Q+DGF+    V VI ATNR + LDPALI   R D  I F LPD + ++ I   +                     +SG DI+ +C +A
Sbjct:  207 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEA 401          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS10_SPETR2.409e-2137.6326S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE2.409e-2137.6326S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.409e-2137.6326S protease regulatory subunit S10B OS=Homo sapie... [more]
SPAST_BOVIN3.146e-2139.29Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
PSMR_METMP3.146e-2132.84Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM73.146e-2132.84Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS4_RAT3.146e-2132.3526S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE3.146e-2132.3526S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN3.146e-2132.3526S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DROME3.146e-2132.3526S protease regulatory subunit 4 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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