CX300696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METBF (DNA-directed RNA polymerase subunit N OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpoN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12 Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 3 Query: 51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 +IPVRCF+CGKVI N +D Y + + +A L++LG+TRYCCRRM+L+HV+L+ L Y Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSPY 61
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_ARCFU (DNA-directed RNA polymerase subunit N OS=Archaeoglobus fulgidus GN=rpoN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12 Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 57 PVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYN 236 P+RCF+CG VIG+ YD Y L S K+AL+ELG+ RYCCRRM +TH +I++L ++ Sbjct: 13 PIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKELSRFH 72
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_THEON (DNA-directed RNA polymerase subunit N OS=Thermococcus onnurineus (strain NA1) GN=rpoN PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.792e-12 Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MI+PVRCFTCGKVIG+KY + + + L++LG+ RYCCRR +L+HV+LI +++ Y Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METAC (DNA-directed RNA polymerase subunit N OS=Methanosarcina acetivorans GN=rpoN PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12 Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 3 Query: 51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 +IPVRCF+CGKVI N +D Y + + + L++LG+TRYCCRRM L+HV+L+ L Y Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSPY 61
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULSO (DNA-directed RNA polymerase subunit N OS=Sulfolobus solfataricus GN=rpoN PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.892e-12 Identity = 27/62 (43.55%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 M+IP+RCFTCG +I +K+ ++ + + L++LG+ RYCCRRM+L+HVD+I ++++Y Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIY (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpoN PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 M+IP+RCFTCG +I +K+ ++ + + L++LG+ RYCCRRM+L+H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIN (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 M+IP+RCFTCG +I +K+ ++ + + L++LG+ RYCCRRM+L+H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIM (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 M+IP+RCFTCG +I +K+ ++ + + L++LG+ RYCCRRM+L+H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIL (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 M+IP+RCFTCG +I +K+ ++ + + L++LG+ RYCCRRM+L+H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIK (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpoN PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 M+IP+RCFTCG +I +K+ ++ + + L++LG+ RYCCRRM+L+H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62 The following BLAST results are available for this feature:
BLAST of CX300696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300696 ID=CX300696; Name=CX300696; organism=Citrus sinensis; type=EST; length=412bpback to top |