CX300696

Overview
NameCX300696
Unique NameCX300696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METBF (DNA-directed RNA polymerase subunit N OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpoN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 3
Query:   51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            +IPVRCF+CGKVI N +D Y   + +  +A   L++LG+TRYCCRRM+L+HV+L+  L  Y
Sbjct:    1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSPY 61          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_ARCFU (DNA-directed RNA polymerase subunit N OS=Archaeoglobus fulgidus GN=rpoN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   57 PVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYN 236
            P+RCF+CG VIG+ YD Y   L    S K+AL+ELG+ RYCCRRM +TH  +I++L  ++
Sbjct:   13 PIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKELSRFH 72          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_THEON (DNA-directed RNA polymerase subunit N OS=Thermococcus onnurineus (strain NA1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.792e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            MI+PVRCFTCGKVIG+KY  +   +      +  L++LG+ RYCCRR +L+HV+LI +++ Y
Sbjct:    1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METAC (DNA-directed RNA polymerase subunit N OS=Methanosarcina acetivorans GN=rpoN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 3
Query:   51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            +IPVRCF+CGKVI N +D Y   + +   +   L++LG+TRYCCRRM L+HV+L+  L  Y
Sbjct:    1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSPY 61          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULSO (DNA-directed RNA polymerase subunit N OS=Sulfolobus solfataricus GN=rpoN PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.892e-12
Identity = 27/62 (43.55%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            M+IP+RCFTCG +I +K+  ++  +    +    L++LG+ RYCCRRM+L+HVD+I ++++Y
Sbjct:    1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIY (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            M+IP+RCFTCG +I +K+  ++  +    +    L++LG+ RYCCRRM+L+H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIN (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            M+IP+RCFTCG +I +K+  ++  +    +    L++LG+ RYCCRRM+L+H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIM (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            M+IP+RCFTCG +I +K+  ++  +    +    L++LG+ RYCCRRM+L+H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIL (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            M+IP+RCFTCG +I +K+  ++  +    +    L++LG+ RYCCRRM+L+H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIK (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            M+IP+RCFTCG +I +K+  ++  +    +    L++LG+ RYCCRRM+L+H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
The following BLAST results are available for this feature:
BLAST of CX300696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RPON_METBF1.050e-1252.46DNA-directed RNA polymerase subunit N OS=Methanosa... [more]
RPON_ARCFU1.050e-1251.67DNA-directed RNA polymerase subunit N OS=Archaeogl... [more]
RPON_THEON1.792e-1250.00DNA-directed RNA polymerase subunit N OS=Thermococ... [more]
RPON_METAC3.056e-1250.82DNA-directed RNA polymerase subunit N OS=Methanosa... [more]
RPON_SULSO8.892e-1243.55DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIY1.981e-1141.94DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIN1.981e-1141.94DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIM1.981e-1141.94DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIL1.981e-1141.94DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIK1.981e-1141.94DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionC08001C04SK PhyRootSw1 Citrus sinensis cDNA clone C08001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300696 ID=CX300696; Name=CX300696; organism=Citrus sinensis; type=EST; length=412bp
AAGCAAACGACCCTTCTATCCTCTAGAACTCCTCACAAGATAGCATTATG
ATCATCCCTGTTCGTTGTTTTACCTGTGGTAAGGTTATTGGAAACAAATA
TGATTGGTATTTGGATTTATTAGTGAATGAATACTCTGCCAAGGATGCTT
TAAATGAACTTGGACTTACAAGATATTGTTGCCGAAGAATGATTTTGACC
CATGTTGACTTAATCCAAAAGCTTCTCAACTATAACACTATGCAACACCG
AACACTAGCAACGCCATCATCAAATACTGCTCCTACATCCACAACATCCG
CCAACGCTCCTTAAATTTCTTTGATCGGTGTCAGTTTTGTTCATAGAAGA
AGTTGTTTCATGTAAAAATTAATAATTCAAAAATCTTTTTTCAAAAAAAA
AAAAAAAAAAAA
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