CX300696

Overview
NameCX300696
Unique NameCX300696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIA (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.27) GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            M+IP+RCFTCG +I +K+  ++  +    +    L++LG+ RYCCRRM+L+H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METB6 (DNA-directed RNA polymerase subunit N OS=Methanoregula boonei (strain 6A8) GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 3
Query:   51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            +IPVRCFTCGKVI   ++ Y          K  L++LG+TRYCCRRM+LTH ++I +L  Y
Sbjct:    1 MIPVRCFTCGKVISPAWEEYKARREKGEDPKKILDDLGITRYCCRRMLLTHKEIIDELNPY 61          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_THEAC (DNA-directed RNA polymerase subunit N OS=Thermoplasma acidophilum GN=rpoN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDA----------LNELGLTRYCCRRMILTHVDLIQKLLNYN 236
            MIIPVRCF+CG+VI + Y  Y+   VNE  A+             ++LG+ RYCCRRMI++HVDLI +++ ++
Sbjct:    1 MIIPVRCFSCGRVIASDYGRYIKR-VNEIKAEGRDPSPEEIEKIFDDLGIERYCCRRMIVSHVDLISEIMPFS 72          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_PYRKO (DNA-directed RNA polymerase subunit N OS=Pyrococcus kodakaraensis GN=rpoN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            MI+PVRCFTCGKV+ +KY  +   +         L++LG+ RYCCRR +L+HV+LI +++ Y
Sbjct:    1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METTP (DNA-directed RNA polymerase subunit N OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpoN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 3
Query:   51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            +IPVRCF+CGKVI + ++ Y + + +E   K  +++LG+ RYCCRRM+L+HV++++ L  Y
Sbjct:    1 MIPVRCFSCGKVISSVWEEYRERIKSEPPGK-VMDDLGIERYCCRRMLLSHVEVVEMLRRY 60          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METVS (DNA-directed RNA polymerase subunit N OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpoN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTH 203
            MI P+RCF+CG VI   YD Y   L N  S ++ LN+LG+T+YCCRRM  +H
Sbjct:    1 MIFPIRCFSCGNVISEVYDEYKTRLSNVESPEEILNDLGVTKYCCRRMFASH 52          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METS5 (DNA-directed RNA polymerase subunit N OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            MIIPVRCFTCG +I +K+D +   +         L++L + R CCRR +LTHVD+I++++NY
Sbjct:    1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVVNY 62          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METHJ (DNA-directed RNA polymerase subunit N OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpoN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 3
Query:   51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233
            +IPVRCFTCGKVI   Y+ +          K  L++LG+ RYCCRRM+LTH ++I +L  Y
Sbjct:    1 MIPVRCFTCGKVISTAYEEFKRRRDASEDPKRILDDLGMDRYCCRRMLLTHKEIIDELNPY 61          
The following BLAST results are available for this feature:
BLAST of CX300696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RPON_SULIA1.981e-1141.94DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_METB62.587e-1150.82DNA-directed RNA polymerase subunit N OS=Methanore... [more]
RPON_THEAC4.413e-1145.21DNA-directed RNA polymerase subunit N OS=Thermopla... [more]
RPON_PYRKO4.413e-1146.77DNA-directed RNA polymerase subunit N OS=Pyrococcu... [more]
RPON_METTP4.413e-1145.90DNA-directed RNA polymerase subunit N OS=Methanosa... [more]
RPON_METVS5.764e-1153.85DNA-directed RNA polymerase subunit N OS=Methanoco... [more]
RPON_METS55.764e-1146.77DNA-directed RNA polymerase subunit N OS=Metallosp... [more]
RPON_METHJ9.832e-1149.18DNA-directed RNA polymerase subunit N OS=Methanosp... [more]

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Properties
Property NameValue
Genbank descriptionC08001C04SK PhyRootSw1 Citrus sinensis cDNA clone C08001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300696 ID=CX300696; Name=CX300696; organism=Citrus sinensis; type=EST; length=412bp
AAGCAAACGACCCTTCTATCCTCTAGAACTCCTCACAAGATAGCATTATG
ATCATCCCTGTTCGTTGTTTTACCTGTGGTAAGGTTATTGGAAACAAATA
TGATTGGTATTTGGATTTATTAGTGAATGAATACTCTGCCAAGGATGCTT
TAAATGAACTTGGACTTACAAGATATTGTTGCCGAAGAATGATTTTGACC
CATGTTGACTTAATCCAAAAGCTTCTCAACTATAACACTATGCAACACCG
AACACTAGCAACGCCATCATCAAATACTGCTCCTACATCCACAACATCCG
CCAACGCTCCTTAAATTTCTTTGATCGGTGTCAGTTTTGTTCATAGAAGA
AGTTGTTTCATGTAAAAATTAATAATTCAAAAATCTTTTTTCAAAAAAAA
AAAAAAAAAAAA
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