CK940039

Overview
NameCK940039
Unique NameCK940039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.450e-58
Identity = 116/184 (63.04%), Postives = 143/184 (77.72%), Query Frame = 1
Query:  181 MSNFQQGNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 732
            M N    +YN    +VFK+VLIG+S VGK+ LL+RF R+EFS DS+ TIGVEF T+T+++    VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  V RWL+EL  HA+  I++MLVGNKSDL   R VPTE+A  FAE  GL F+ETSAL+STNVELAF TVL EI+  VSK+
Sbjct:    1 MGNRTDEDYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQ 180          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 5.885e-58
Identity = 113/218 (51.83%), Postives = 152/218 (69.72%), Query Frame = 1
Query:  202 NYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKA--LTANDXXXXXXXXXXXKATNIVVPGQEPESGRRSYYCC 849
            +Y    DY+FKIVLIGDS VGKS LL+RF  DEF+++SK+TIGVEF T+T+ + +K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDI+K  S++N   WL ELR +AD N+ + L+GNKSDL  LRAVPT++AK FA +  + F ETSAL S NV+ AF  ++  I+++VSK    L+ +              T  + P  + +  ++S  CC
Sbjct:    5 DYGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSSNCC 222          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 1.311e-57
Identity = 111/183 (60.66%), Postives = 140/183 (76.50%), Query Frame = 1
Query:  202 NYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            +Y    D +FKIVLIGDS VGKS LL+RF ++EF++DSK+TIGVEF T+TL I  K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDI+K  S++N   WL ELR +AD N+ + L+GNKSDL  LRAVPTE++K FA++  L F ETSAL S NV+ AF  ++  IY+ VSK  +   D
Sbjct:    5 DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGD 187          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.450e-56
Identity = 114/200 (57.00%), Postives = 146/200 (73.00%), Query Frame = 1
Query:  220 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIV-SKKALTANDXXXXXXXXXXXKATNIVVPGQE 816
            +Y+FKIV+IGDSAVGKS LL RF R+EF+  +KATIGV+F TK++ I +K + AQ WDTAGQER+RAVTS YYRGAVGAM+VYDIT + SF NV RWL ELR  A+++I+IM+VGNKSDLE  R VPT++A+ FAE   + F+ETSAL STNV  +F  +LT+IY +V SKK +  +D           K T +  P  +
Sbjct:    8 EYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQ 207          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.041e-46
Identity = 91/165 (55.15%), Postives = 126/165 (76.36%), Query Frame = 1
Query:  220 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 714
            DY+ KIV+IGDS VGKS LL+R+ ++EFS+   +TIGVEF TKTL I +K +K Q+WDTAGQE+Y ++T +YY+GA+GA++VY+I  R SF+N+ +WL++ R +A ++  IMLVGNKSDL+  R V T + K+FAEK  + F+ETSAL+S NVE AF  +   IY
Sbjct:    9 DYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIY 173          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.029e-46
Identity = 91/198 (45.96%), Postives = 127/198 (64.14%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQE 816
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+            ATN  + G +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATLAGNQ 202          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.957e-46
Identity = 91/181 (50.28%), Postives = 130/181 (71.82%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T R+S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.814e-46
Identity = 91/198 (45.96%), Postives = 126/198 (63.64%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQE 816
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+            ATN    G +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQ 202          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.814e-46
Identity = 91/198 (45.96%), Postives = 126/198 (63.64%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQE 816
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+            ATN    G +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQ 202          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.814e-46
Identity = 91/198 (45.96%), Postives = 126/198 (63.64%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQE 816
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+            ATN    G +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQ 202          
The following BLAST results are available for this feature:
BLAST of CK940039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_MOUSE3.450e-5863.04Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
YPT32_YEAST5.885e-5851.83GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
YPT31_YEAST1.311e-5760.66GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11C_DICDI1.450e-5657.00Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI1.041e-4655.15Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB2A_CHICK3.029e-4645.96Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB1B_MACFA3.957e-4650.28Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB2A_PONAB8.814e-4645.96Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MACFA8.814e-4645.96Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN8.814e-4645.96Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940039 ID=CK940039; Name=CK940039; organism=Citrus sinensis; type=EST; length=867bp
GGGGATCTTTTATGCTTTTTTCCTACAAAGCACAAACCCATCTCAGATTT
TTCAATAATATTAACAAAATCTTTCCTTTTCGGATTGATTCAACTCAAAA
ACGTAACTTTGATCCGAAGGTTTCATCTTTTCTATTGGGTCGCATAGTCT
CTTACGAAACGTATCGAATAGAAAATTAAGATGTCGAACTTTCAGCAAGG
TAACTATAATAATAAAATCGATTATGTATTCAAAATAGTATTGATTGGAG
ACTCTGCAGTGGGCAAGTCTCAGCTTTTGGCTCGTTTTGCAAGAGATGAA
TTCAGTTTAGATTCAAAGGCCACGATCGGTGTTGAGTTTCAAACAAAGAC
ACTTGTTATTCATCACAAAAATGTCAAAGCTCAGATTTGGGACACTGCCG
GTCAAGAAAGGTATCGGGCTGTAACAAGTGCATACTACAGAGGTGCAGTG
GGGGCGATGCTGGTCTATGACATAACTAAGCGTCAGTCATTTGATAATGT
GGCGAGGTGGTTAGAGGAACTGCGGGGACATGCAGATAAAAATATTATCA
TCATGCTTGTGGGCAACAAGTCTGACCTGGAGACCCTGCGAGCTGTACCC
ACTGAGGATGCGAAAGAGTTTGCTGAAAAGGAAGGCCTCTGCTTCATGGA
GACATCAGCTCTTGAGTCCACTAATGTTGAGCTTGCTTTCCTCACAGTCT
TGACAGAGATTTATCGAATTGTCAGCAAAAAGGCTCTCACTGCCAATGAT
GAATCAGAATCTGGTGGGAGTTCTTCGCTTCTTAAGGCTACCAATATTGT
TGTCCCTGGGCAGGAACCAGAGTCTGGGCGAAGGAGTTACTACTGTTGCA
CATCATCGTAGGNNNNN
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