CK940039

Overview
NameCK940039
Unique NameCK940039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.814e-46
Identity = 91/198 (45.96%), Postives = 126/198 (63.64%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQE 816
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+            ATN    G +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQ 202          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.151e-45
Identity = 91/198 (45.96%), Postives = 126/198 (63.64%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQE 816
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+            ATN    G +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHGATNATHAGNQ 202          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.151e-45
Identity = 91/181 (50.28%), Postives = 130/181 (71.82%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R VTS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.151e-45
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.151e-45
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.151e-45
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.504e-45
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.504e-45
Identity = 89/168 (52.98%), Postives = 126/168 (75.00%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711
            N   DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKE+A++ G+ F+ETSA  +TNVE AF+T+  EI
Sbjct:    5 NPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.964e-45
Identity = 90/191 (47.12%), Postives = 124/191 (64.92%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATN 795
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+            ATN
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATN 195          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.964e-45
Identity = 89/168 (52.98%), Postives = 125/168 (74.40%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNK DL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
The following BLAST results are available for this feature:
BLAST of CK940039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CANFA8.814e-4645.96Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_RABIT1.151e-4545.96Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB1B_RAT1.151e-4550.28Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB1.151e-4549.72Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN1.151e-4549.72Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN1.151e-4549.72Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_MOUSE1.504e-4549.72Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST1.504e-4552.98Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB2A_MOUSE1.964e-4547.12Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB1_DISOM1.964e-4552.98Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940039 ID=CK940039; Name=CK940039; organism=Citrus sinensis; type=EST; length=867bp
GGGGATCTTTTATGCTTTTTTCCTACAAAGCACAAACCCATCTCAGATTT
TTCAATAATATTAACAAAATCTTTCCTTTTCGGATTGATTCAACTCAAAA
ACGTAACTTTGATCCGAAGGTTTCATCTTTTCTATTGGGTCGCATAGTCT
CTTACGAAACGTATCGAATAGAAAATTAAGATGTCGAACTTTCAGCAAGG
TAACTATAATAATAAAATCGATTATGTATTCAAAATAGTATTGATTGGAG
ACTCTGCAGTGGGCAAGTCTCAGCTTTTGGCTCGTTTTGCAAGAGATGAA
TTCAGTTTAGATTCAAAGGCCACGATCGGTGTTGAGTTTCAAACAAAGAC
ACTTGTTATTCATCACAAAAATGTCAAAGCTCAGATTTGGGACACTGCCG
GTCAAGAAAGGTATCGGGCTGTAACAAGTGCATACTACAGAGGTGCAGTG
GGGGCGATGCTGGTCTATGACATAACTAAGCGTCAGTCATTTGATAATGT
GGCGAGGTGGTTAGAGGAACTGCGGGGACATGCAGATAAAAATATTATCA
TCATGCTTGTGGGCAACAAGTCTGACCTGGAGACCCTGCGAGCTGTACCC
ACTGAGGATGCGAAAGAGTTTGCTGAAAAGGAAGGCCTCTGCTTCATGGA
GACATCAGCTCTTGAGTCCACTAATGTTGAGCTTGCTTTCCTCACAGTCT
TGACAGAGATTTATCGAATTGTCAGCAAAAAGGCTCTCACTGCCAATGAT
GAATCAGAATCTGGTGGGAGTTCTTCGCTTCTTAAGGCTACCAATATTGT
TGTCCCTGGGCAGGAACCAGAGTCTGGGCGAAGGAGTTACTACTGTTGCA
CATCATCGTAGGNNNNN
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