CK940039
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3) HSP 1 Score: 180.259 bits (456), Expect = 1.273e-44 Identity = 88/168 (52.38%), Postives = 124/168 (73.81%), Query Frame = 1 Query: 208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711 N + DY+FK++LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T + SF+NV +WL+E+ +A +N+ +LVGNK DL T + V AKEFA+ G+ F+ETSA +TNVE +F+T+ EI Sbjct: 5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3) HSP 1 Score: 179.874 bits (455), Expect = 1.662e-44 Identity = 89/168 (52.98%), Postives = 122/168 (72.62%), Query Frame = 1 Query: 208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711 N + DY+FK++LIGDS VGKS LL RF+ D + +TIGV+F+ +T+ K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T +SF+NV +WL E+ +A N+ +LVGNKSDL RA+P E AK FA++ G+ FMETSA ++TNVE AF+ + I Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASI 169
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44 Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 1 Query: 223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 717 Y+FK ++IGD+ VGKS LL +F F TIGVEF + + I K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+++A WLE+ R HA+ N+ IML+GNK DL RAV TE+ ++FA++ GL F+ETSA + NVE AF+ EIY+ Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYK 169
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44 Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 1 Query: 223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 717 Y+FK ++IGD+ VGKS LL +F F TIGVEF + + I K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+++A WLE+ R HA+ N+ IML+GNK DL RAV TE+ ++FA++ GL F+ETSA + NVE AF+ EIY+ Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYK 169
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.835e-44 Identity = 90/180 (50.00%), Postives = 126/180 (70.00%), Query Frame = 1 Query: 208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 747 N + DY+FK++LIGDS VGKS LL RFA D + +TIGV+F+ +T+ K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL E+ +A N+ +LVGNKSDL + V TE AK FA++ G+ FMETSA +TNV+ AF+ + I ++ + AN Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAAN 181
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.835e-44 Identity = 86/169 (50.89%), Postives = 119/169 (70.41%), Query Frame = 1 Query: 223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 729 Y+FK ++IGD+ VGKS LL +F F TIGVEF + + I K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+++ WLE+ R H+ N++IML+GNKSDLE+ R V E+ + FA + GL FMETSA + NVE A++ EIYR + + Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 3.703e-44 Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 1 Query: 208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711 N + DY+FK++LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL E+ +A +N+ +LVGNKSDL + + V AK FA++ G+ F+ETSA +TNVE AF+T+ EI Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.837e-44 Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 1 Query: 208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711 N + DY+FK++LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL E+ +A +N+ +LVGNKSDL + V + AK FA++ G+ F+ETSA +TNVE AF+T+ EI Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 6.317e-44 Identity = 89/181 (49.17%), Postives = 127/181 (70.17%), Query Frame = 1 Query: 208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750 N D +FK++LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+ +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+ HA +N+ +LVGNKSDL T + V AKEFA+ G+ F+ETSA +TNVE AF+T+ EI + + A + + Sbjct: 2 NPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGE 182
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 6.317e-44 Identity = 102/218 (46.79%), Postives = 138/218 (63.30%), Query Frame = 1 Query: 208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQ----EPESGRRSYYCC 849 N Y+FK++LIGDS VGKS LL RFA D +S +TIGV+F+ +T+ ++ K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T + +F+NV +WL+E+ A +N+ +LVGNKSDL + V AK FA+ + F+ETSA +STNVE AF+T+ TEI K LTA+ N VVPG P+SG CC Sbjct: 2 NPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI-----KNRLTASQPTQTVD-------KNKVVPGSSAPISPKSG-----CC 202 The following BLAST results are available for this feature:
BLAST of CK940039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK940039 ID=CK940039; Name=CK940039; organism=Citrus sinensis; type=EST; length=867bpback to top |