CK940039

Overview
NameCK940039
Unique NameCK940039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.273e-44
Identity = 88/168 (52.38%), Postives = 124/168 (73.81%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T + SF+NV +WL+E+  +A +N+  +LVGNK DL T + V    AKEFA+  G+ F+ETSA  +TNVE +F+T+  EI
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.662e-44
Identity = 89/168 (52.98%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711
            N + DY+FK++LIGDS VGKS LL RF+ D +     +TIGV+F+ +T+    K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T  +SF+NV +WL E+  +A  N+  +LVGNKSDL   RA+P E AK FA++ G+ FMETSA ++TNVE AF+ +   I
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASI 169          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44
Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 717
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+++A WLE+ R HA+ N+ IML+GNK DL   RAV TE+ ++FA++ GL F+ETSA  + NVE AF+    EIY+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYK 169          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44
Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 717
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+++A WLE+ R HA+ N+ IML+GNK DL   RAV TE+ ++FA++ GL F+ETSA  + NVE AF+    EIY+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYK 169          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.835e-44
Identity = 90/180 (50.00%), Postives = 126/180 (70.00%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 747
            N + DY+FK++LIGDS VGKS LL RFA D +     +TIGV+F+ +T+    K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL E+  +A  N+  +LVGNKSDL   + V TE AK FA++ G+ FMETSA  +TNV+ AF+ +   I   ++ +   AN
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAAN 181          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.835e-44
Identity = 86/169 (50.89%), Postives = 119/169 (70.41%), Query Frame = 1
Query:  223 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 729
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+++  WLE+ R H+  N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  + NVE A++    EIYR + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.703e-44
Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL E+  +A +N+  +LVGNKSDL + + V    AK FA++ G+ F+ETSA  +TNVE AF+T+  EI
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.837e-44
Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 711
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL E+  +A +N+  +LVGNKSDL   + V  + AK FA++ G+ F+ETSA  +TNVE AF+T+  EI
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.317e-44
Identity = 89/181 (49.17%), Postives = 127/181 (70.17%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            N   D +FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+  +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  HA +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGE 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.317e-44
Identity = 102/218 (46.79%), Postives = 138/218 (63.30%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQ----EPESGRRSYYCC 849
            N    Y+FK++LIGDS VGKS LL RFA D +S    +TIGV+F+ +T+ ++ K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T + +F+NV +WL+E+   A +N+  +LVGNKSDL   + V    AK FA+   + F+ETSA +STNVE AF+T+ TEI     K  LTA+               N VVPG      P+SG     CC
Sbjct:    2 NPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI-----KNRLTASQPTQTVD-------KNKVVPGSSAPISPKSG-----CC 202          
The following BLAST results are available for this feature:
BLAST of CK940039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_PIG1.273e-4452.38Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RBD2A_ARATH1.662e-4452.98Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTV4_VOLCA2.171e-4452.73GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE2.171e-4452.73GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPTM2_MAIZE2.835e-4450.00GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB2B_MOUSE2.835e-4450.89Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
YPTC1_CHLRE3.703e-4452.38GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPTV1_VOLCA4.837e-4452.38GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1C_HUMAN6.317e-4449.17Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_DICDI6.317e-4446.79Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940039 ID=CK940039; Name=CK940039; organism=Citrus sinensis; type=EST; length=867bp
GGGGATCTTTTATGCTTTTTTCCTACAAAGCACAAACCCATCTCAGATTT
TTCAATAATATTAACAAAATCTTTCCTTTTCGGATTGATTCAACTCAAAA
ACGTAACTTTGATCCGAAGGTTTCATCTTTTCTATTGGGTCGCATAGTCT
CTTACGAAACGTATCGAATAGAAAATTAAGATGTCGAACTTTCAGCAAGG
TAACTATAATAATAAAATCGATTATGTATTCAAAATAGTATTGATTGGAG
ACTCTGCAGTGGGCAAGTCTCAGCTTTTGGCTCGTTTTGCAAGAGATGAA
TTCAGTTTAGATTCAAAGGCCACGATCGGTGTTGAGTTTCAAACAAAGAC
ACTTGTTATTCATCACAAAAATGTCAAAGCTCAGATTTGGGACACTGCCG
GTCAAGAAAGGTATCGGGCTGTAACAAGTGCATACTACAGAGGTGCAGTG
GGGGCGATGCTGGTCTATGACATAACTAAGCGTCAGTCATTTGATAATGT
GGCGAGGTGGTTAGAGGAACTGCGGGGACATGCAGATAAAAATATTATCA
TCATGCTTGTGGGCAACAAGTCTGACCTGGAGACCCTGCGAGCTGTACCC
ACTGAGGATGCGAAAGAGTTTGCTGAAAAGGAAGGCCTCTGCTTCATGGA
GACATCAGCTCTTGAGTCCACTAATGTTGAGCTTGCTTTCCTCACAGTCT
TGACAGAGATTTATCGAATTGTCAGCAAAAAGGCTCTCACTGCCAATGAT
GAATCAGAATCTGGTGGGAGTTCTTCGCTTCTTAAGGCTACCAATATTGT
TGTCCCTGGGCAGGAACCAGAGTCTGGGCGAAGGAGTTACTACTGTTGCA
CATCATCGTAGGNNNNN
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