CX044093

Overview
NameCX044093
Unique NameCX044093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 57/148 (38.51%), Postives = 77/148 (52.03%), Query Frame = -3
Query:  238 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            AV+V+ GT+  +G V+ + +  GPTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   +EG+A   I    IPL G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   53 AVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = -3
Query:  238 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            AVAV+ GT+  +G V+ + E  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P G             G L NI   ++G+A   I    IPL G N+V+GR  VVH             S  + + G  +A G +GL+
Sbjct:   71 AVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLT 218          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = -3
Query:  238 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            AVAV+ GT+  +G V+ + +  GPTTVK  ++GL PG H   +H +G+ +N  +STGP F P G             G L NI   + G+A   +    IPL G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   70 AVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 217          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = -3
Query:  292 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHS 615
            ++ AVAVI G N  KG++ F  + +G T VKG ++GL PG H   IH  G+ +N   STGP F P   D           G L N+   ++G+A   +  T IPL G +S++GR +VVH+
Sbjct:    3 VIKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHA 122          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 51/128 (39.84%), Postives = 66/128 (51.56%), Query Frame = -3
Query:  265 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP-----AGAD------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVHSSPSPDPGDG 612
            + AV V+ GT    GTV F     GP T+KGS++GL PG H   +H +G+ +N  IS GP + P      G D      G L N+     G+A FEI  + + L G  S+IGR LVVH     D G G
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEK-EDDLGKG 127          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 57/148 (38.51%), Postives = 74/148 (50.00%), Query Frame = -3
Query:  238 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            AVAV+ G +  +G V+ + E   PTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   + G+A   I    IPL G NSVIGR LVVH             S  + + G  +A G +GL+
Sbjct:   53 AVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = -3
Query:  238 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP------AGAD-----GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            AVAV+ G +  +G V+ S +  GPTTV   ++GL PG H   +H YG+ +N  +STG  F P      A  D     G L NI   ++G+A   +    IPL G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   68 AVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 215          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14
Identity = 56/148 (37.84%), Postives = 73/148 (49.32%), Query Frame = -3
Query:  238 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            AVAV+ GT+   G V+   E  GPTTV   ++GL PG H   +H YG+ +N  ISTG  F P     GA        G L NI    +G+A   I    IPL G+NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   67 AVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 214          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 51/129 (39.53%), Postives = 65/129 (50.39%), Query Frame = -3
Query:  262 NAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVHSSPSPDPGDGV 609
            N +AV+ G N   G + F  E  G PTT+ G + GL PG H   +H YG+ +N  IS GP F P               G L NI   ++G A  +I  K + L G NS+IGR LVVH+    D G GV
Sbjct:    4 NRIAVLRGDNV-SGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHAD-QDDLGKGV 130          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = -3
Query:  292 MVNAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKTI-PLFGTNSVIGRGLVVHS 615
            MVNA+ +I G  G +G V+ S E  G P  + G++SGL PG H + +H +G+ SN  IS G  + P   +           G L NI   S G+AT  I  TI  LFG  SV+GR +V+HS
Sbjct:    1 MVNAIVIIKGL-GVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHS 120          
The following BLAST results are available for this feature:
BLAST of CX044093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
SODCP_PEA3.458e-1638.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLCS4.516e-1636.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_PETHY4.516e-1636.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODC2_MESCR1.006e-1539.17Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC_PRIGL2.241e-1539.84Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODCP_MEDSA8.517e-1538.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_SOLLC1.112e-1436.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_ZANAE5.520e-1437.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODC_BRUPA9.416e-1439.53Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC6_DICDI1.230e-1340.50Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15C10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15C10-E19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044093 ID=CX044093; Name=CX044093; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTCTTAAGGACAGTGCACAGCACGCCTGGACTTTT
ATTTATTTTATTTACGGCCACATTCTACAAGGTACAACATATTACAGACA
TGCCCTGGCTTTTATTTATTTTATTATAGCCAGATTTTGATTCGTACAAC
ATATTATTTATTTTATTAAGTATTCAAGACACATTCGACATCATGTCAAA
TGTATTTATTATGGTATGGAGAGAAGCCCCTTCAATAACTGAGACCGATG
GTGCCCCAAGCTACTCCATCACCAGGATCTGGACTGGGACTTGAGTGGAC
TACAAGACCCCTTCCAATAACGGAATTTGTTCCAAAAAGAGGAATCGTCT
TGTAAATTTCAAAAGTAGCAATACCCTCACTAGTAACAGTGATGTTTTCT
AAAAAACCGTCAGCTCCAGCAGGTTTAAAAGGGGGTCCAGTTGATATCCA
ATCATTGCTTATGTTTCCGTAAGTGTGAATAATGAGTGCGTGATCACCAG
GCGGCAAACCAGAGAGGCTTCCTTTCACAGTTGTTGGACCACTTCCTTCA
ACGCTAAAGGAAACAGTTCCCTTGCGACCGTTAGTTCCAGTAATAACTGC
AACTGCATTCACCATTGTGCTGTGTGATATCACAACGCCCTTAGAGAGAG
GAAAATCCT
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