CK940008

Overview
NameCK940008
Unique NameCK940008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_CERDE (Photosystem I assembly protein ycf3 OS=Ceratophyllum demersum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.983e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_CALFG (Photosystem I assembly protein ycf3 OS=Calycanthus floridus var. glaucus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.983e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_BUXMI (Photosystem I assembly protein ycf3 OS=Buxus microphylla GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.983e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_AMBTC (Photosystem I assembly protein ycf3 OS=Amborella trichopoda GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.983e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_SORBI (Photosystem I assembly protein ycf3 OS=Sorghum bicolor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 209
            MPRSRINGNFIDKT SIVANILL+IIPTT GEK AFTYYRDGAI
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLQIIPTTSGEKRAFTYYRDGAI 44          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_SINAL (Photosystem I assembly protein ycf3 OS=Sinapis alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_BRAJU (Photosystem I assembly protein ycf3 OS=Brassica juncea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_ARATH (Photosystem I assembly protein ycf3 OS=Arabidopsis thaliana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_CUSEX (Photosystem I assembly protein ycf3 OS=Cuscuta exaltata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            M RSRINGNF+DKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFLDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_SOLTU (Photosystem I assembly protein ycf3 OS=Solanum tuberosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRSR NGNFIDKTFSIVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRTNGNFIDKTFSIVADILLRVIPTTSGEKEAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of CK940008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YCF3_CERDE9.983e-1695.24Photosystem I assembly protein ycf3 OS=Ceratophyll... [more]
YCF3_CALFG9.983e-1695.24Photosystem I assembly protein ycf3 OS=Calycanthus... [more]
YCF3_BUXMI9.983e-1695.24Photosystem I assembly protein ycf3 OS=Buxus micro... [more]
YCF3_AMBTC9.983e-1695.24Photosystem I assembly protein ycf3 OS=Amborella t... [more]
YCF3_SORBI1.304e-1590.91Photosystem I assembly protein ycf3 OS=Sorghum bic... [more]
YCF3_SINAL1.304e-1590.48Photosystem I assembly protein ycf3 OS=Sinapis alb... [more]
YCF3_BRAJU1.304e-1590.48Photosystem I assembly protein ycf3 OS=Brassica ju... [more]
YCF3_ARATH1.304e-1590.48Photosystem I assembly protein ycf3 OS=Arabidopsis... [more]
YCF3_CUSEX1.703e-1592.86Photosystem I assembly protein ycf3 OS=Cuscuta exa... [more]
YCF3_SOLTU2.224e-1590.48Photosystem I assembly protein ycf3 OS=Solanum tub... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940008 ID=CK940008; Name=CK940008; organism=Citrus sinensis; type=EST; length=285bp
GGGGTACAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGA
AACGAATTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGG
AAATTTTATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAA
TAATTCCGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGAT
GGTGCGATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAG
AAAGACAATTCGGGATAGAAAAAAAAAAAAAAAAA
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