CK940008

Overview
NameCK940008
Unique NameCK940008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_CHLAT (Photosystem I assembly protein ycf3 OS=Chlorokybus atmophyticus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRS+ N NFIDKTF++VA+ILL+I+PTT  EKEAF YYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTVVADILLKILPTTGREKEAFAYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_MESVI (Photosystem I assembly protein ycf3 OS=Mesostigma viride GN=ycf3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRS+ N NFIDKTF++VA+I+L+++PTTV EK AF+YYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTVVADIILKVLPTTVREKAAFSYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_HUPLU (Photosystem I assembly protein ycf3 OS=Huperzia lucidula GN=ycf3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRS+ N NFIDKTF++VA+  L++IPTT GEK+AFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTLVADTSLQVIPTTQGEKKAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_SCEOB (Photosystem I assembly protein ycf3 OS=Scenedesmus obliquus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 28/42 (66.67%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRS+ N NFIDKTF+++A+ILL+++PT+  EK+AFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTVIADILLKVLPTSQREKQAFTYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_CUSOB (Photosystem I assembly protein ycf3 OS=Cuscuta obtusiflora GN=ycf3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MP S+ N NFID+TFSI+ANILLRIIPTT GEKEAF YY +G
Sbjct:    1 MPISQKNQNFIDRTFSIIANILLRIIPTTSGEKEAFAYYING 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_CUSGR (Photosystem I assembly protein ycf3 OS=Cuscuta gronovii GN=ycf3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MP S+ N NFID+TFSI+ANILLRIIPTT GEKEAF YY +G
Sbjct:    1 MPISQKNQNFIDRTFSIIANILLRIIPTTSGEKEAFAYYING 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_BIGNA (Photosystem I assembly protein ycf3 OS=Bigelowiella natans GN=ycf3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 28/42 (66.67%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRS+ N NFIDKTF++VA+ILL+++PT++ EK AFTYYR+G
Sbjct:    1 MPRSQKNDNFIDKTFTVVADILLKVLPTSIDEKRAFTYYRNG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_ADICA (Photosystem I assembly protein ycf3 OS=Adiantum capillus-veneris GN=ycf3 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRS+ N NFIDKTF+I+A+IL+RI+PTT  E+EAF YYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTILADILIRILPTTKREREAFIYYRDG 42          
BLAST of CK940008 vs. ExPASy Swiss-Prot
Match: YCF3_PSEAK (Photosystem I assembly protein ycf3 OS=Pseudendoclonium akinetum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 28/42 (66.67%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   78 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 203
            MPRS+ N NFIDKTF++VA+IL++++PT+  EK+AFTYYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTVVADILIKVLPTSNREKQAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of CK940008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YCF3_CHLAT2.545e-1173.81Photosystem I assembly protein ycf3 OS=Chlorokybus... [more]
YCF3_MESVI3.323e-1169.05Photosystem I assembly protein ycf3 OS=Mesostigma ... [more]
YCF3_HUPLU4.341e-1171.43Photosystem I assembly protein ycf3 OS=Huperzia lu... [more]
YCF3_SCEOB5.669e-1166.67Photosystem I assembly protein ycf3 OS=Scenedesmus... [more]
YCF3_CUSOB5.669e-1176.19Photosystem I assembly protein ycf3 OS=Cuscuta obt... [more]
YCF3_CUSGR5.669e-1176.19Photosystem I assembly protein ycf3 OS=Cuscuta gro... [more]
YCF3_BIGNA5.669e-1166.67Photosystem I assembly protein ycf3 OS=Bigelowiell... [more]
YCF3_ADICA7.404e-1171.43Photosystem I assembly protein ycf3 OS=Adiantum ca... [more]
YCF3_PSEAK9.670e-1166.67Photosystem I assembly protein ycf3 OS=Pseudendocl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940008 ID=CK940008; Name=CK940008; organism=Citrus sinensis; type=EST; length=285bp
GGGGTACAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGA
AACGAATTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGG
AAATTTTATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAA
TAATTCCGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGAT
GGTGCGATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAG
AAAGACAATTCGGGATAGAAAAAAAAAAAAAAAAA
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