CK940005
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_PYRAB (50S ribosomal protein L24P OS=Pyrococcus abyssi GN=rpl24p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18 Identity = 45/98 (45.92%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 89 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 382 S RK RK + AP +R+ +M+APLS +LR+KY +R++PVR D+V+++RG +KG EGKVV+V +++ I++E T K NG+ V I+PS V+I Sbjct: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_KORCO (50S ribosomal protein L24P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl24p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18 Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 2 Query: 104 KNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 385 K RK + AP R +MSAPLS +L+ KY + S+P+RK D V+V+RG Y+G EG+V+ V R+++ I ++ I R K +G+ V V I+PSKVVIT Sbjct: 10 KQRKYLYNAPIHHRGKIMSAPLSEELKSKYGINSIPIRKGDRVKVMRGDYRGTEGEVISVDRKRYRIAVKGIVRRKADGTEVPVPIHPSKVVIT 103
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_METKA (50S ribosomal protein L24P OS=Methanopyrus kandleri GN=rpl24p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18 Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 2 Query: 89 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 382 SS RK RKA F AP R+ LMSA L +LR+K+N RS+PVR+ D V+++RG +KG EG+VV+V ++ I++E T E+ NG V I+PS V+I Sbjct: 6 SSQPRKQRKAFFNAPLHKRQKLMSATLHPELRKKFNRRSLPVRRGDMVRIMRGDFKGHEGEVVEVDLKRLRIYVEGATIERANGEKVYYPIHPSNVMI 103
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_AERPE (50S ribosomal protein L24P OS=Aeropyrum pernix GN=rpl24p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18 Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 89 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 382 S RK R+A + AP R+ L+SA LS +LR+KY VRS+PVRK D+V+V+RG +KG EGKVV+V R+ I+I+ +T K +G+ V I+PS V+I Sbjct: 7 SRQPRKQRRALYRAPLHARQKLVSATLSPELREKYGVRSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRRLRIYIDGVTVTKADGTPVFRPIHPSNVMI 104
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_STAMF (50S ribosomal protein L24P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl24p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17 Identity = 45/98 (45.92%), Postives = 67/98 (68.37%), Query Frame = 2 Query: 89 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 382 SS K RKA F P +R L +APLS +LR+KY V+ +PVRK D V+++RG +KG EGKVV++ R+ +++E + R+K + + V I+PSKV+I Sbjct: 6 SSKPSKQRKALFNMPLHLRHKLFNAPLSKELREKYGVKKLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVEGVQRKKADQTPVYYPIHPSKVMI 103
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_HYPBU (50S ribosomal protein L24P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl24p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.925e-16 Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 2 Query: 89 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 382 SS RK R+A F AP R+ LM+APLS +LR++Y +RS+PVR DEV ++RG +KG GKVV+V R+ I +E +T G I+PS V+I Sbjct: 6 SSQPRKQRRALFNAPLHKRQKLMAAPLSPELRKQYGIRSLPVRVGDEVVIMRGDFKGHRGKVVRVDLRRMRIFVEGVTITNARGEPRYYPIHPSNVMI 103
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_METTH (50S ribosomal protein L24P OS=Methanobacterium thermoautotrophicum GN=rpl24p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16 Identity = 42/99 (42.42%), Postives = 69/99 (69.70%), Query Frame = 2 Query: 86 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 382 +S RK RK + AP RR +MSA LS +LR++Y RS+P+RK D+V+++RG ++G EGKV +V +++ +++E T +KV+G+TV ++PS + I Sbjct: 1 MSKQPRKQRKYIYEAPLHARRKMMSANLSRELREEYGRRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVEGATIQKVDGTTVYFPLHPSNLRI 99
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_METS3 (50S ribosomal protein L24P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl24p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15 Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 2 Query: 86 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 382 +S RK RKA + AP+ R MSA LS DLR RS+P+RK D+VQV+RG +KG EG V+ V + I IE +T K +G+ V + ++PS V+I Sbjct: 1 MSKQPRKQRKALYNAPAHARGKHMSATLSKDLRADIGKRSLPIRKGDKVQVLRGDFKGHEGAVLGVDYGSYKITIEEVTLSKPDGTAVFLPVDPSNVMI 99
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_IGNH4 (50S ribosomal protein L24P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl24p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 89 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 385 S K RK + AP +R M+APLS +LR+KY V+ +PVRK D V++VRG ++G EG V +V +K I+++ T E G I+PSKV+IT Sbjct: 6 SKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIIT 104
BLAST of CK940005 vs. ExPASy Swiss-Prot
Match: RL24_SULAC (50S ribosomal protein L24P OS=Sulfolobus acidocaldarius GN=rpl24p PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15 Identity = 40/100 (40.00%), Postives = 68/100 (68.00%), Query Frame = 2 Query: 86 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 385 +SS K RK + P+ +R L++A LS DL ++Y ++ + +RK D V+++RG+ G EGKVV+V R++ + IE +T++K +G+ V V ++ SKV+IT Sbjct: 2 ISSKPSKQRKLVYNLPNHLRYKLLTARLSEDLEKQYGIKRISIRKGDSVKLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIIT 101 The following BLAST results are available for this feature:
BLAST of CK940005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK940005 ID=CK940005; Name=CK940005; organism=Citrus sinensis; type=EST; length=740bpback to top |