CX300694

Overview
NameCX300694
Unique NameCX300694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5791 contig Csv1_Contig5791:1341..1804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_KLEP7 (3-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TL+++M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLINQMER--KDAQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGARISTTLLNLMER--RDAQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    4 KINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 171
            K+N  GGA+A+GHPLG TGAR VAT+L E+K+     + GV+SMCIGTGMGAAA+F
Sbjct:  363 KVNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 414          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_CITK8 (3-ketoacyl-CoA thiolase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.626e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDAQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHIFL (3-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHIF8 (3-ketoacyl-CoA thiolase OS=Shigella flexneri serotype 5b (strain 8401) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +KIN+NGGA+A+GHPLG +G+R   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 DKINLNGGAIALGHPLGCSGSRISTTLLNNMER--RDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ENTCL (3-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TL++ M+  G+D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLINLME--GKDAQFGLATMCIGLGQGIATVFER 386          
The following BLAST results are available for this feature:
BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FADA_KLEP77.301e-1459.323-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae s... [more]
FADA_ERWT99.535e-1461.023-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (s... [more]
THIK_YEAST1.245e-1364.293-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
FADA_CITK81.626e-1361.023-ketoacyl-CoA thiolase OS=Citrobacter koseri (str... [more]
FADA_SHIFL2.124e-1361.023-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fa... [more]
FADA_SHIF82.124e-1361.023-ketoacyl-CoA thiolase OS=Shigella flexneri serot... [more]
FADA_SHIBS2.124e-1361.023-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADA_SERP52.124e-1359.323-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_ESCF32.124e-1361.023-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADA_ENTCL2.124e-1359.323-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN... [more]

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Properties
Property NameValue
Genbank descriptionC08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA
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