CX300694 | Citrus Genome Database

Overview


Name	CX300694
Unique Name	CX300694
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	464

Libraries


Library Name	Type
PhyRootSw1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5791	contig	Csv1_Contig5791:1341..1804.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ECOLI (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain K12) GN=fadA PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ECOHS (3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 (strain HS) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+R  +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +GAR   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGARISTTLLNLMER--RDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +GAR   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGARISTTLLNLMER--RDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +GAR   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGARISTTLLNLMER--RDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +GAR   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGARISTTLLNLMER--RDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +GAR   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGARISTTLLNLMER--RDVQFGLATMCIGLGQGIATVFER 386

[Close]

BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +GAR   TLL+ M+R  RD +FG+ +MCIG G G A VFER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGARISTTLLNLMER--RDVQFGLATMCIGLGQGIATVFER 386

The following BLAST results are available for this feature:

BLAST of CX300694 vs. ExPASy Swiss-Prot

BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
FADA_ECOLI	2.124e-13	61.02	3-ketoacyl-CoA thiolase OS=Escherichia coli (strai...	[more]
FADA_ECOL6	2.124e-13	61.02	3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=...	[more]
FADA_ECOHS	2.124e-13	61.02	3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 ...	[more]
FADA_ECO24	2.124e-13	61.02	3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H...	[more]
FADA_YERPS	2.774e-13	59.32	3-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul...	[more]
FADA_YERPP	2.774e-13	59.32	3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain...	[more]
FADA_YERPN	2.774e-13	59.32	3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant...	[more]
FADA_YERPE	2.774e-13	59.32	3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA...	[more]
FADA_YERPA	2.774e-13	59.32	3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant...	[more]
FADA_YERP3	2.774e-13	59.32	3-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul...	[more]

Pages

Properties


Property Name	Value
Genbank description	C08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA