CX300694

Overview
NameCX300694
Unique NameCX300694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5791 contig Csv1_Contig5791:1341..1804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+   +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMEH--KDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ECO57 (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TLL+ M+   +D +FG+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLLNLMEH--KDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +G+R   TL+++M+    D +FG+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGSRISTTLINQMEH--HDVQFGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.349e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TL++ M+   +D ++G+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGARISTTLINLME--AKDAKYGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.349e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TL++ M+   +D ++G+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGARISTTLINLME--AKDAKYGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.349e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TL++ M+   +D ++G+ +MCIG G G A VFER
Sbjct:  334 EKVNLNGGAIALGHPLGCSGARISTTLINLME--AKDAKYGLATMCIGLGQGIATVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.067e-12
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +G+R   TL+H M+   +D   G+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGSRISTTLIHLMEE--KDANLGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.067e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TLL+ M+   +D   GV +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGARISTTLLNLMEE--KDATLGVATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.067e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+NVNGGA+A+GHP+G +GAR + TLLH M  + RD   G+ ++CIG G G A V ER
Sbjct:  336 EKVNVNGGAIALGHPIGASGARILVTLLHAM--QARDKTLGLATLCIGGGQGIAMVIER 392          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    7 INVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 174
            +NVNGGA+AIGHP+G +GAR + TLL EMKRRG   R G+ ++CIG GMG A   E
Sbjct:  337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390          
The following BLAST results are available for this feature:
BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FADA_ECOK18.072e-1359.323-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]
FADA_ECO578.072e-1359.323-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
FADA_PHOPR1.798e-1254.243-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_VIBVY2.349e-1254.243-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_VIBVU2.349e-1254.243-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
FADA_VIBPA2.349e-1254.243-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADA_AERS43.067e-1254.243-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_AERHH3.067e-1257.633-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
ATOB_ECOLI3.067e-1255.93Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THIL_ZOORA5.232e-1260.71Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]

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Properties
Property NameValue
Genbank descriptionC08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA
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