CX300694

Overview
NameCX300694
Unique NameCX300694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5791 contig Csv1_Contig5791:1341..1804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 KINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            K+NVNGGA+AIGHP+G +GAR + TLL+EM++  RD + G+ ++CIG G G A   ER
Sbjct:  338 KVNVNGGAIAIGHPIGASGARVLVTLLYEMQK--RDAKKGLATLCIGGGQGVALAVER 393          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 KINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            K+NVNGGA+AIGHP+G +GAR + TLL+EM++  RD + G+ ++CIG G G A   ER
Sbjct:  338 KVNVNGGAIAIGHPIGASGARVLVTLLYEMQK--RDAKKGLATLCIGGGQGVALAVER 393          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FGV +MCIG G G A VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVSTMCIGLGQGIATVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FGV +MCIG G G A VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVSTMCIGLGQGIATVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FGV +MCIG G G A VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVSTMCIGLGQGIATVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TL++ M+   +D + G+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGARISTTLINLMEE--KDAKLGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.833e-12
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +G+R   +L+H M+   ++ R+G+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGSRISTSLIHLME--DKNVRYGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLINLMEH--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLINLMEH--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLINLMEH--KDATLGLATMCIGLGQGIATVFER 386          
The following BLAST results are available for this feature:
BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIL_THIVI5.232e-1255.17Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]
THIL_CHRVI5.232e-1255.17Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
FADA_PSEU25.232e-1257.633-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSESM5.232e-1257.633-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSE145.232e-1257.633-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_IDILO5.232e-1254.243-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_PSEHT6.833e-1252.543-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_SHESR8.924e-1255.933-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHESM8.924e-1255.933-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEON8.924e-1255.933-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]

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Properties
Property NameValue
Genbank descriptionC08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA
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