CX300694

Overview
NameCX300694
Unique NameCX300694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5791 contig Csv1_Contig5791:1341..1804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLINLMEE--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EKIN+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  330 EKINLNGGAIALGHPLGCSGARISTTLINLMEE--KDATIGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FGV +MCIG G G + VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVATMCIGLGQGISTVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 INVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +NVNGGA+AIGHP+G +GAR + TLL EMKRRG     G+ ++CIG GMG A   ER
Sbjct:  338 VNVNGGAIAIGHPIGASGARVLNTLLFEMKRRG--VSKGLATLCIGGGMGVAMCVER 392          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  330 EKVNLNGGAIALGHPLGCSGARISTTLINLME--SKDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FG+ +MCIG G G A VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGLSTMCIGLGQGIATVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FGV +MCIG G G + VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVSTMCIGLGQGISTVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TLL+ M+ +G   + GV +MCIG G G A V+ER
Sbjct:  334 EKVNLNGGAIALGHPLGCSGARISTTLLNIMQAKGG--KLGVSTMCIGLGQGIATVWER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +G R   TL++ M+   +D ++G+ +MCIG G G A +FER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGTRISTTLINLME--AKDAKYGLATMCIGLGQGIATIFER 386          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +G R   TL++ M+   +D ++G+ +MCIG G G A +FER
Sbjct:  330 DKVNLNGGAIALGHPLGCSGTRISTTLINLME--AKDAKYGLATMCIGLGQGIATIFER 386          
The following BLAST results are available for this feature:
BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FADA_SHEFN8.924e-1255.933-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_SHEDO8.924e-1255.933-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
FADA_PSEPF8.924e-1255.933-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
THIL_RHIME1.166e-1159.65Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
FADA_SHELP1.166e-1154.243-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_PSEFR1.166e-1155.933-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_PSEF51.166e-1155.933-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_MARAV1.522e-1155.933-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
FADA_VIBCH1.988e-1149.153-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC31.988e-1149.153-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]

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Properties
Property NameValue
Genbank descriptionC08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA
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