CX300694

Overview
NameCX300694
Unique NameCX300694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5791 contig Csv1_Contig5791:1341..1804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.597e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +G R   TLL+ M  R +D   G+ +MCIG G G A VFER
Sbjct:  334 DKVNLNGGAIALGHPLGCSGTRISTTLLNVM--REKDATVGLATMCIGMGQGIATVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            ++IN+NGGA+A+GHPLG +G+R   TL++ M+  G+D   G+ +MCIG G G A VFER
Sbjct:  329 DQINLNGGAIALGHPLGCSGSRISGTLINLME--GQDVNIGLATMCIGLGQGIATVFER 385          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIC_MOUSE (Acetyl-CoA acetyltransferase, cytosolic OS=Mus musculus GN=Acat2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.429e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERG 180
            EK+N++GGA+A+GHPLG +G R + TLLH ++R G     GV ++CIG GMG A   +RG
Sbjct:  340 EKVNIDGGAIALGHPLGASGCRILVTLLHTLERVGG--TRGVAALCIGGGMGVAMCVQRG 397          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.429e-11
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N+NGGA+A+GHPLG +GAR   TLL+ M+   +D + G+ +MCIG G G A + ER
Sbjct:  334 EKVNLNGGAIALGHPLGCSGARITGTLLNVME--WKDGQIGLATMCIGLGQGIATIIER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIC_RAT (Acetyl-CoA acetyltransferase, cytosolic OS=Rattus norvegicus GN=Acat2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.785e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERG 180
            EK+N++GGA+A+GHPLG +G R + TLLH ++R G     GV ++CIG GMG A   +RG
Sbjct:  340 EKVNIDGGAIALGHPLGASGCRILVTLLHTLERVGG--TRGVAALCIGGGMGIAMCVQRG 397          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: ATOB_PSEAE (Acetyl-CoA acetyltransferase OS=Pseudomonas aeruginosa GN=atoB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.785e-11
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    4 KINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            ++NVNGGA+A+GHP+G +G R + TLLHEM R  RD + G+ ++CIG G G A    R
Sbjct:  337 RVNVNGGAIALGHPIGASGCRVLVTLLHEMIR--RDAKKGLATLCIGGGQGVALTLAR 392          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVATMCVGLGQGITTVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVATMCVGLGQGITTVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVATMCVGLGQGITTVFER 390          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVATMCVGLGQGITTVFER 390          
The following BLAST results are available for this feature:
BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FADA_MARMS2.597e-1154.243-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
FADA_COLP33.391e-1152.543-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
THIC_MOUSE4.429e-1151.67Acetyl-CoA acetyltransferase, cytosolic OS=Mus mus... [more]
FADA_ALCBS4.429e-1152.543-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
THIC_RAT5.785e-1151.67Acetyl-CoA acetyltransferase, cytosolic OS=Rattus ... [more]
ATOB_PSEAE5.785e-1151.72Acetyl-CoA acetyltransferase OS=Pseudomonas aerugi... [more]
FADA_PSEPU7.555e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEPK7.555e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP17.555e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEOL7.555e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]

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Properties
Property NameValue
Genbank descriptionC08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA
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