CK939939

Overview
NameCK939939
Unique NameCK939939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.335e-17
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 413
            AITC  VTG+L PC+ +LR+GG+ P P CC G + L GA  T  DR+ AC C K A   +  +  ++A+ LP +CG+S    I+PN +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 413
            + CGQV  SLA CI FL  G   P   CC GV++L   A T+ DR+AAC C+K A    P I  + A+ LP++CGV I   IS  T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVS-IPYKISPNTDCSRV 413
            PV  AI+C QV  ++ PC  +L      P   CC  +R L+     TPDRQA CNCLK   +S  G+    AA LP  C V+ +   ISPN DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  135 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 413
            +AI+C  V   L PC+++L +G   PP  CC+GV+SL  A  T+ D++AAC C+K    S+  +   +A  L   CG S+P   SP  DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYR--SIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 416
            AI+C  V  +L PC+ ++  GG  P   CCNG+R L+  A +  D+Q  C C+K      S   I    AA LP +CGV +PYKI P+T+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYRSI---PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 416
            A++C  V   L PC++++  GG  P   CCNG+ +L   A T+ DRQ  C C+K A   +   P    N A  LP +CGV +PYK SP+TDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQN-ALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 413
            + CGQV  +L+ C+ FL      P   CC GV  L   A T  D++ AC C+K A    P I  + A+ LP +CGV I   IS  T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CK939939 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 31/90 (34.44%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  144 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAAGTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISP---NTDC 404
            TCG V G+L PC+ F++   + P   CC+G + L+G   T P R  AC C++ A ++   I+  + + +P+ CG+ +  K+ P   N DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
The following BLAST results are available for this feature:
BLAST of CK939939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP1_HELAN5.335e-1743.48Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPA_RICCO2.027e-1645.05Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP_PINTA1.716e-1543.30Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTP8_ARATH2.241e-1539.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPA_ARATH6.521e-1540.00Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH2.478e-1440.63Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPB_RICCO2.319e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT13_PARJU3.349e-1134.44Probable non-specific lipid-transfer protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004743_F02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939939 ID=CK939939; Name=CK939939; organism=Citrus sinensis; type=EST; length=659bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTCCATGCATCGCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGG
CGCCGCCGGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGC
AAGCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTT
CCTCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGA
CTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTT
GTATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTT
TGAGTGATTAATTCTAGTTATTTTGTGGTACCAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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