EY666052 | Citrus Genome Database

Overview


Name	EY666052
Unique Name	EY666052
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	854

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_RHILW (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.254e-51
Identity = 65/91 (71.43%), Postives = 75/91 (82.42%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIV 534
            VIG+DLGTTNSCVAVM+GK+ KVIEN+EG RTTPS+VAF+  GE LVG PAKRQAVTNP NTLF  KRLIGRR+ D   +K+  +VPF IV
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKHLVPFTIV 94

HSP 2 Score: 87.8113 bits (216), Expect = 7.254e-51
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVEANG+ YSP+QI A +L KMKETAESYLG+   KAVI VP  F DAQ++A +    ++  L+V +II           G   K G ++  +D GGG
Sbjct:   98 NGDAWVEANGKGYSPAQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDA-GRIAGLEVLRIINEPTA-AALAYGLDKKEGKTIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_RHIL3 (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.254e-51
Identity = 65/91 (71.43%), Postives = 75/91 (82.42%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIV 534
            VIG+DLGTTNSCVAVM+GK+ KVIEN+EG RTTPS+VAF+  GE LVG PAKRQAVTNP NTLF  KRLIGRR+ D   +K+  +VPF IV
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKHLVPFTIV 94

HSP 2 Score: 87.8113 bits (216), Expect = 7.254e-51
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVEANG+ YSP+QI A +L KMKETAESYLG+   KAVI VP  F DAQ++A +    ++  L+V +II           G   K G ++  +D GGG
Sbjct:   98 NGDAWVEANGKGYSPAQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDA-GRIAGLEVLRIINEPTA-AALAYGLDKKEGKTIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_BART1 (Chaperone protein dnaK OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dnaK PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.255e-51
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIV 534
            VIG+DLGTTNSCVAVM+GKN KVIENSEG RTTPSVVAF   GE LVG PAKRQAVTNP  T+F  KRLIGRRF+D   +K+  +VP+KIV
Sbjct:    4 VIGIDLGTTNSCVAVMDGKNAKVIENSEGARTTPSVVAFTDGGERLVGQPAKRQAVTNPEGTVFAVKRLIGRRFDDPMVEKDKALVPYKIV 94

HSP 2 Score: 85.1149 bits (209), Expect = 7.255e-51
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVE  G++YSPSQI A +L KMKETAESYLG+   +AVI VP  F DAQ++A +    K+  L+V +II           G   K G ++  +D GGG
Sbjct:   98 NGDAWVEEAGKKYSPSQISAMILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTA-AALAYGLDKKDGKTIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP2 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain HaA2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.607e-50
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNA 540
            VIG+DLGTTNSCVAVM+GKN KVIEN+EG RTTPS+VAF+  GE LVG PAKRQAVTNP  T F  KRL+GRR++D   +K+ K+VP+KIV A
Sbjct:    4 VIGIDLGTTNSCVAVMDGKNSKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKA 96

HSP 2 Score: 83.1889 bits (204), Expect = 1.607e-50
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVEA+GQ YSPSQ+ AF+L KMKETAE++LG+   +AVI VP  F DAQ++A +    K+  L+V +II           G       ++  +D GGG
Sbjct:   98 NGDAWVEADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTA-AALAYGLDKTKAGTIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.607e-50
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNA 540
            +IG+DLGTTNSCVAVMEG  PKVIEN+EG RTTPS+VAF + GE LVG PAKRQ+VTNP  T F  KRLIGRR++D   +K+  +VP+ IV A
Sbjct:    4 IIGIDLGTTNSCVAVMEGSTPKVIENAEGARTTPSIVAFTEDGERLVGQPAKRQSVTNPERTFFAVKRLIGRRYDDPTVEKDKHLVPYSIVRA 96

HSP 2 Score: 88.1965 bits (217), Expect = 1.607e-50
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVEA+G++YSPSQI AFVL KMKETAES+LG+   KAVI VP  F DAQ++A +    ++  L+V +II           G   K   ++  +D GGG
Sbjct:   98 NGDAWVEADGKKYSPSQISAFVLQKMKETAESFLGEKVEKAVITVPAYFNDAQRQATKDA-GRIAGLEVLRIINEPTA-AALAYGLDKKSAGTIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_METS4 (Chaperone protein dnaK OS=Methylobacterium sp. (strain 4-46) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.094e-50
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNA 540
            VIG+DLGTTNSCVAVMEG  PKVIEN+EG RTTPS+VAF  +GE LVG PAKRQAVTNP+ T F  KRLIGR ++D  TQK+  +VP+ IV A
Sbjct:    4 VIGIDLGTTNSCVAVMEGTQPKVIENAEGARTTPSIVAFTDEGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTYDDPMTQKDKGLVPYHIVRA 96

HSP 2 Score: 85.8853 bits (211), Expect = 2.094e-50
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVEA+G+Q+SPSQI AF L KMKETAESYLG+  ++AVI VP  F DAQ++A +    K+  L+V +II           G   K    +  +D GGG
Sbjct:   98 NGDAWVEADGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTA-AALAYGLDKKKSGVIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: HSP7M_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=AN6010 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.556e-50
Identity = 73/114 (64.04%), Postives = 83/114 (72.81%), Query Frame = 1

Query:  193 PSWASANWASLARPFSVRPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIV 534
            PS A+  W S             VIG+DLGTTNS VAVMEGK PK+IEN+EG RTTPSVVAF Q GE LVG  AKRQAV NP NTLF TKRLIGR+F DA+ Q+++K VP+KIV
Sbjct:   25 PSTAARRWNSTEEKVK-----GQVIGIDLGTTNSAVAVMEGKTPKIIENAEGARTTPSVVAFAQDGERLVGIAAKRQAVVNPENTLFATKRLIGRKFTDAEVQRDIKEVPYKIV 133

HSP 2 Score: 78.9518 bits (193), Expect = 3.556e-50
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVEA G++YSP+QIG FVL KMKETAE+YL K    AV+ VP  F D+Q++A +   + +  L V +++           G + +    +  +D GGG
Sbjct:  137 NGDAWVEARGEKYSPAQIGGFVLGKMKETAENYLSKPVKNAVVTVPAYFNDSQRQATKDAGQ-IAGLNVLRVVNEPTA-AALAYGLEKEADRVVAVYDLGGG 236

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_METRJ (Chaperone protein dnaK OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.878e-50
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKI 531
            VIG+DLGTTNSCVAVMEG  PKVIENSEG RTTPS+VAF   GE LVG PAKRQAVTNP  T F  KRLIGR ++D  TQK+  +VP+KI
Sbjct:    4 VIGIDLGTTNSCVAVMEGTQPKVIENSEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPMTQKDKGLVPYKI 93

HSP 2 Score: 85.1149 bits (209), Expect = 7.878e-50
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWVEA+G++YSPSQI AF L KMKETAES+LG+  ++AVI VP  F DAQ++A +    K+  L+V +II           G   K   ++  +D GGG
Sbjct:   98 NGDAWVEADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTA-AALAYGLDKKKSGTIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_ZYMMO (Chaperone protein dnaK OS=Zymomonas mobilis GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.878e-50
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIV 534
            VIG+DLGTTNSCVAVMEG  PKVIEN+EG RTTPS+VAF +  E L+G PAKRQAVTN  NT+F  KRLIGRRF+D  T+++ ++VP+ IV
Sbjct:    4 VIGIDLGTTNSCVAVMEGGQPKVIENAEGARTTPSIVAFTKDSERLIGQPAKRQAVTNSENTIFAVKRLIGRRFDDPVTKRDTELVPYHIV 94

HSP 2 Score: 88.1965 bits (217), Expect = 7.878e-50
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKIIK*AYCWWTFPMG*KNKGGASLEFFDFGGG 850
            NGDAWV+A GQ YSPSQI AF+L KMKETAESYLG++  +AVI VP  F DAQ++A +    K+  L+V +II           G     G ++  +D GGG
Sbjct:   98 NGDAWVKAGGQDYSPSQISAFILQKMKETAESYLGETVDQAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTA-AALAYGLDKNDGKTIAVYDLGGG 197

[Close]

BLAST of EY666052 vs. ExPASy Swiss-Prot
Match: DNAK_BRAJA (Chaperone protein dnaK OS=Bradyrhizobium japonicum GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.879e-50
Identity = 66/93 (70.97%), Postives = 75/93 (80.65%), Query Frame = 1

Query:  262 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNA 540
            VIG+DLGTTNSCVAVM+GKN KVIENSEG RTTPS+VA    GE LVG PAKRQAVTNP  T F  KRLIGRR++D   +K+ K+VP+KIV A
Sbjct:    4 VIGIDLGTTNSCVAVMDGKNAKVIENSEGMRTTPSIVAVTDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKA 96

HSP 2 Score: 82.4185 bits (202), Expect = 7.879e-50
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 2

Query:  545 NGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSGSKAVILVPTNFYDAQKEANEGCWEKLPVLKVQKII 763
            NGDAWVEA+GQ YSPSQ+ AF+L KMKETAE++LG+   +AVI VP  F DAQ++A +    K+  L+V +II
Sbjct:   98 NGDAWVEADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDA-GKIAGLEVLRII 169

The following BLAST results are available for this feature:

BLAST of EY666052 vs. ExPASy Swiss-Prot

BLAST of EY666052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAK_RHILW	7.254e-51	71.43	Chaperone protein dnaK OS=Rhizobium leguminosarum ...	[more]
DNAK_RHIL3	7.254e-51	71.43	Chaperone protein dnaK OS=Rhizobium leguminosarum ...	[more]
DNAK_BART1	7.255e-51	73.63	Chaperone protein dnaK OS=Bartonella tribocorum (s...	[more]
DNAK_RHOP2	1.607e-50	69.89	Chaperone protein dnaK OS=Rhodopseudomonas palustr...	[more]
DNAK_XANP2	1.607e-50	66.67	Chaperone protein dnaK OS=Xanthobacter autotrophic...	[more]
DNAK_METS4	2.094e-50	69.89	Chaperone protein dnaK OS=Methylobacterium sp. (st...	[more]
HSP7M_EMENI	3.556e-50	64.04	Heat shock 70 kDa protein OS=Emericella nidulans G...	[more]
DNAK_METRJ	7.878e-50	72.22	Chaperone protein dnaK OS=Methylobacterium radioto...	[more]
DNAK_ZYMMO	7.878e-50	68.13	Chaperone protein dnaK OS=Zymomonas mobilis GN=dna...	[more]
DNAK_BRAJA	7.879e-50	70.97	Chaperone protein dnaK OS=Bradyrhizobium japonicum...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-102-013-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY666052 ID=EY666052; Name=EY666052; organism=Citrus sinensis; type=EST; length=854bp
CCCACGCGTCCGAACCCTTGGAAAAGCAACCTAAAACGCTACAAGCTTTC
TCTCGCTTTCAAAAGAGCTAAAGCAAATCGATTAGTCGATATTTACTCAA
TGGCCATCGCCGGTATTCTCCGCTCCTTACGACGGCGAGATGTCGCCTCC
GCCCATCTCTCTGCCTGCAAATCCTTGACGTGCAATGTCAAACCCTCCTG
GGCTTCTGCAAATTGGGCGAGTTTGGCAAGACCTTTCAGTGTGAGACCAG
CAGGGAATGATGTTATTGGGGTTGATTTGGGAACCACCAATTCATGTGTT
GCGGTCATGGAAGGAAAGAATCCTAAAGTTATTGAGAATTCTGAAGGCAC
GAGGACCACGCCGTCAGTGGTGGCCTTCAATCAGAAAGGTGAGTTGCTTG
TGGGTACACCAGCAAAACGTCAGGCTGTGACTAACCCAGCTAATACACTT
TTTGGAACTAAGCGTCTGATTGGTAGGCGATTCAATGATGCCCAAACTCA
AAAAGAAATGAAAATGGTTCCATTCAAGATAGTCAATGCTCCAAAACGGA
GATGCTTGGGTCGAGGCCAATGGGCAACAGTACTCCCCAAGCCAGATCGG
AGCATTCGTTCTAACCAAGATGAAAGAAACAGCAGAGTCTTATCTTGGAA
AGTCTGGTTCTAAAGCAGTGATCCTTGTACCAACTAATTTTTATGATGCT
CAGAAGGAAGCAAACGAAGGATGCTGGGAAAAATTGCCGGTCCTCAAGGT
CCAAAAAATTATTAAATGAGCCTACTGCTGGTGGACTTTTCCTATGGGAT
GAAAAAACAAAGGGGGGGCCTCATTGGAGTTTTTTGATTTTGGGGGGGGG
GAAC