CK939931 | Citrus Genome Database

Overview


Name	CK939931
Unique Name	CK939931
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	413

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_SECCE (Photosystem II reaction center protein I OS=Secale cereale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_SACOF (Photosystem II reaction center protein I OS=Saccharum officinarum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_SACHY (Photosystem II reaction center protein I OS=Saccharum hybrid GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_RANMC (Photosystem II reaction center protein I OS=Ranunculus macranthus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_POPTR (Photosystem II reaction center protein I OS=Populus trichocarpa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_POPAL (Photosystem II reaction center protein I OS=Populus alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_PLAOC (Photosystem II reaction center protein I OS=Platanus occidentalis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_PHAVU (Photosystem II reaction center protein I OS=Phaseolus vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_PHAAO (Photosystem II reaction center protein I OS=Phalaenopsis aphrodite subsp. formosana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939931 vs. ExPASy Swiss-Prot
Match: PSBI_PELHO (Photosystem II reaction center protein I OS=Pelargonium hortorum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK939931 vs. ExPASy Swiss-Prot

BLAST of CK939931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_SECCE	7.245e-14	100.00	Photosystem II reaction center protein I OS=Secale...	[more]
PSBI_SACOF	7.245e-14	100.00	Photosystem II reaction center protein I OS=Saccha...	[more]
PSBI_SACHY	7.245e-14	100.00	Photosystem II reaction center protein I OS=Saccha...	[more]
PSBI_RANMC	7.245e-14	100.00	Photosystem II reaction center protein I OS=Ranunc...	[more]
PSBI_POPTR	7.245e-14	100.00	Photosystem II reaction center protein I OS=Populu...	[more]
PSBI_POPAL	7.245e-14	100.00	Photosystem II reaction center protein I OS=Populu...	[more]
PSBI_PLAOC	7.245e-14	100.00	Photosystem II reaction center protein I OS=Platan...	[more]
PSBI_PHAVU	7.245e-14	100.00	Photosystem II reaction center protein I OS=Phaseo...	[more]
PSBI_PHAAO	7.245e-14	100.00	Photosystem II reaction center protein I OS=Phalae...	[more]
PSBI_PELHO	7.245e-14	100.00	Photosystem II reaction center protein I OS=Pelarg...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004743_G03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIIF_G03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939931 ID=CK939931; Name=CK939931; organism=Citrus sinensis; type=EST; length=413bp
GGGGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGATT
GTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTT
GTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCC
CGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAA
CGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAG
TGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGA
AAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGC
AATCCGACGCTTTAATCCACTCAGCCATCTCTCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA