CK939927
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cycas taitungensis GN=ndhA PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 8.583e-48 Identity = 93/105 (88.57%), Postives = 96/105 (91.43%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810 LSNSL TVDIV AQS+YGFWGWNLWRQPIGFI F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL SSLFVT+LYLGG N SIP I +S Sbjct: 187 LSNSLGTVDIVEAQSRYGFWGWNLWRQPIGFIAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLASSLFVTILYLGGWNFSIPSIPIS 291
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 8.583e-48 Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801 LSNS STVDIV AQSKYGF+GWN+WRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSIPYI Sbjct: 184 LSNSSSTVDIVEAQSKYGFFGWNIWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSIPYI 285
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.464e-47 Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801 LSNS STVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG N SIPYI Sbjct: 184 LSNSSSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYI 285
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PELHO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum GN=ndhA PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.464e-47 Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801 LSNS STVDI+ AQSKYGFWGWNLWRQPIGF++FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKF FY+ SY NLLVSSLFVT+LYLGG N+SIPYI Sbjct: 185 LSNSSSTVDIIEAQSKYGFWGWNLWRQPIGFLIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFAFFYITSYFNLLVSSLFVTILYLGGWNMSIPYI 286
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_POPTR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa GN=ndhA PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 3.261e-47 Identity = 94/104 (90.38%), Postives = 96/104 (92.31%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807 LSNS STVDIV AQSKYG GWNLWRQPIGFI+F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV VLYLGG N+SIPYI V Sbjct: 185 LSNSSSTVDIVEAQSKYGLGGWNLWRQPIGFIIFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVAVLYLGGWNISIPYISV 288
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Physcomitrella patens GN=ndhA PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 7.266e-47 Identity = 89/105 (84.76%), Postives = 97/105 (92.38%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810 LSNSLSTVDIV AQ+KYGFWGWN+WRQPIGF+ F I+SLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL SSLFVT+LYLGG + SIP++ S Sbjct: 187 LSNSLSTVDIVEAQAKYGFWGWNVWRQPIGFLAFFIASLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLASSLFVTILYLGGWHFSIPFLLNS 291
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_ADICA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Adiantum capillus-veneris GN=ndhA PE=2 SV=2) HSP 1 Score: 184.882 bits (468), Expect = 4.709e-46 Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801 LS SLSTVDIV QSKYGFWGWNLWRQPIGFI F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYV SYLNLL SSLFV VLYLGG + SIP++ Sbjct: 187 LSGSLSTVDIVETQSKYGFWGWNLWRQPIGFIAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVGSYLNLLASSLFVVVLYLGGWDFSIPFV 288
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angiopteris evecta GN=ndhA PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 8.033e-46 Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801 LSNSLSTVDIV AQSKYG GWNLWRQPIGF++F ISSLAECERLPFD PEAEEELVAGYQTEYSGIKFGLFYV SYLNLLVSSLFVTVLYLGG +LSIP++ Sbjct: 187 LSNSLSTVDIVDAQSKYGLLGWNLWRQPIGFLIFFISSLAECERLPFDPPEAEEELVAGYQTEYSGIKFGLFYVGSYLNLLVSSLFVTVLYLGGWDLSIPFL 288
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Huperzia lucidula GN=ndhA PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 5.207e-45 Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807 LSNSLSTVDIV AQSKYGFWGWN WRQPIGF+ F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS+ NLL SSL T+LYLGG N IP++F+ Sbjct: 186 LSNSLSTVDIVEAQSKYGFWGWNSWRQPIGFVAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASHPNLLTSSLSATILYLGGWNSPIPFLFL 289
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PSINU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Psilotum nudum GN=ndhA PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 6.800e-45 Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801 LSNSLSTVDIV AQSKYG GWNLWRQP+GFIVF++SSLAECERLPFDLPEAEEELVAGYQTEYS IKFG F++ SYLNLLVSSLFVTVLYLGG +LS+P++ Sbjct: 187 LSNSLSTVDIVEAQSKYGILGWNLWRQPVGFIVFIVSSLAECERLPFDLPEAEEELVAGYQTEYSSIKFGFFFIGSYLNLLVSSLFVTVLYLGGWDLSLPFL 288 The following BLAST results are available for this feature:
BLAST of CK939927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939927 ID=CK939927; Name=CK939927; organism=Citrus sinensis; type=EST; length=816bpback to top |