CK939927

Overview
NameCK939927
Unique NameCK939927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cycas taitungensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.583e-48
Identity = 93/105 (88.57%), Postives = 96/105 (91.43%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            LSNSL TVDIV AQS+YGFWGWNLWRQPIGFI F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL SSLFVT+LYLGG N SIP I +S
Sbjct:  187 LSNSLGTVDIVEAQSRYGFWGWNLWRQPIGFIAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLASSLFVTILYLGGWNFSIPSIPIS 291          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.583e-48
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801
            LSNS STVDIV AQSKYGF+GWN+WRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSIPYI
Sbjct:  184 LSNSSSTVDIVEAQSKYGFFGWNIWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSIPYI 285          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.464e-47
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801
            LSNS STVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG N SIPYI
Sbjct:  184 LSNSSSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYI 285          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PELHO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.464e-47
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801
            LSNS STVDI+ AQSKYGFWGWNLWRQPIGF++FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKF  FY+ SY NLLVSSLFVT+LYLGG N+SIPYI
Sbjct:  185 LSNSSSTVDIIEAQSKYGFWGWNLWRQPIGFLIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFAFFYITSYFNLLVSSLFVTILYLGGWNMSIPYI 286          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_POPTR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa GN=ndhA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.261e-47
Identity = 94/104 (90.38%), Postives = 96/104 (92.31%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNS STVDIV AQSKYG  GWNLWRQPIGFI+F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV VLYLGG N+SIPYI V
Sbjct:  185 LSNSSSTVDIVEAQSKYGLGGWNLWRQPIGFIIFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVAVLYLGGWNISIPYISV 288          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Physcomitrella patens GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.266e-47
Identity = 89/105 (84.76%), Postives = 97/105 (92.38%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            LSNSLSTVDIV AQ+KYGFWGWN+WRQPIGF+ F I+SLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL SSLFVT+LYLGG + SIP++  S
Sbjct:  187 LSNSLSTVDIVEAQAKYGFWGWNVWRQPIGFLAFFIASLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLASSLFVTILYLGGWHFSIPFLLNS 291          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_ADICA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Adiantum capillus-veneris GN=ndhA PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.709e-46
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801
            LS SLSTVDIV  QSKYGFWGWNLWRQPIGFI F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYV SYLNLL SSLFV VLYLGG + SIP++
Sbjct:  187 LSGSLSTVDIVETQSKYGFWGWNLWRQPIGFIAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVGSYLNLLASSLFVVVLYLGGWDFSIPFV 288          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angiopteris evecta GN=ndhA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.033e-46
Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801
            LSNSLSTVDIV AQSKYG  GWNLWRQPIGF++F ISSLAECERLPFD PEAEEELVAGYQTEYSGIKFGLFYV SYLNLLVSSLFVTVLYLGG +LSIP++
Sbjct:  187 LSNSLSTVDIVDAQSKYGLLGWNLWRQPIGFLIFFISSLAECERLPFDPPEAEEELVAGYQTEYSGIKFGLFYVGSYLNLLVSSLFVTVLYLGGWDLSIPFL 288          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Huperzia lucidula GN=ndhA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.207e-45
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNSLSTVDIV AQSKYGFWGWN WRQPIGF+ F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS+ NLL SSL  T+LYLGG N  IP++F+
Sbjct:  186 LSNSLSTVDIVEAQSKYGFWGWNSWRQPIGFVAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASHPNLLTSSLSATILYLGGWNSPIPFLFL 289          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PSINU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Psilotum nudum GN=ndhA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.800e-45
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYI 801
            LSNSLSTVDIV AQSKYG  GWNLWRQP+GFIVF++SSLAECERLPFDLPEAEEELVAGYQTEYS IKFG F++ SYLNLLVSSLFVTVLYLGG +LS+P++
Sbjct:  187 LSNSLSTVDIVEAQSKYGILGWNLWRQPVGFIVFIVSSLAECERLPFDLPEAEEELVAGYQTEYSSIKFGFFFIGSYLNLLVSSLFVTVLYLGGWDLSLPFL 288          
The following BLAST results are available for this feature:
BLAST of CK939927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CYCTA8.583e-4888.57NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AGRST8.583e-4891.18NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SORBI1.464e-4791.18NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PELHO1.464e-4787.25NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_POPTR3.261e-4790.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHYPA7.266e-4784.76NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ADICA4.709e-4687.25NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ANGEV8.033e-4688.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HUPLU5.207e-4583.65NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PSINU6.800e-4584.31NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004743_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939927 ID=CK939927; Name=CK939927; organism=Citrus sinensis; type=EST; length=816bp
GCGGGTCTCAGANNNAAGAAGAGGAACAAAAANNNAGAAAAAATACAATT
ACAATCTAAAAGAATCCTTTCTTTCATATATTGATAGAAATCAAATTCGT
GTCATGATTCATGAACTAGTGTAATGGCGAATTCTTTTTCGTAATCGAAA
ATAAAAGGATGGGTTGAAATATCGAGTGATATTTCTACAAGAGTATTTTA
TTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTTGAAATTCGTA
AAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTTAGAGCAGACA
GAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTTGACTTTATCC
ATCCTATAACCATATAAAAATCAAAATAACTAATACCGGTCCGGTCCTTA
CATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAATCTCATGTACG
GTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGACTATGATTATC
TAACAGTTTAAGTACAGTTGATATAGTTGGGGCGCAATCAAAATATGGTT
TTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTATCGTTTTTCTA
ATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATTTACCAGAAGC
GGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCAGGAATAAAAT
TTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGTTTCCTCATTA
TTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCATTCCATACAT
ATTTGTTTCCTGGGCT
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