CK939927
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PLEBO (NAD(P)H-quinone oxidoreductase subunit 1 OS=Plectonema boryanum GN=ndhA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.590e-36 Identity = 71/105 (67.62%), Postives = 85/105 (80.95%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810 +SNSLSTVDIV Q+ YG GWN+WRQP+GFI+F I++LAECER+PFDLPEAEEELVAGYQTEYSG+KF LFY+ SY+NL +S+L VLYLGG I +S Sbjct: 186 MSNSLSTVDIVNQQAGYGILGWNIWRQPVGFIIFWIAALAECERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYVNLTLSALLFAVLYLGGWEFPISLSVIS 290
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP4 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.590e-36 Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPY-IFVSW 813 +SNSLSTVDIV QS G GWN+WRQP+G I+F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V +LYLGG + IP + SW Sbjct: 186 MSNSLSTVDIVNQQSGLGILGWNVWRQPVGLILFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSALMVAILYLGGWDFPIPLNLVASW 292
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH8102) GN=ndhA PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 4.418e-36 Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSW 813 +SNSLSTVDIVG Q+ G WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+A Y+NL++S++ V+VLYLGG IP V W Sbjct: 187 MSNSLSTVDIVGQQTGAGILSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLAGYINLVLSAVLVSVLYLGGWGFPIP---VEW 289
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROMT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhA PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36 Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 777 +SNSLSTVDIV Q+ GF WN+WRQP+GFI+F I +LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY+A Y+NL++S+L V+VLYLGG Sbjct: 186 MSNSLSTVDIVEQQNTAGFLSWNIWRQPVGFIIFWICALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLAGYINLVLSALLVSVLYLGG 279
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhA PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36 Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIP 795 +SNSLST+DIV QS YG GWN+WRQP+GF +F I++LAECERLPFDLPEAEEE+VAGYQTEY+G+KF LFY+ SY+NL++S+L +LYLGG +P Sbjct: 186 MSNSLSTIDIVEQQSGYGILGWNIWRQPVGFFIFWIAALAECERLPFDLPEAEEEIVAGYQTEYAGMKFALFYLGSYVNLVLSALVFAILYLGGWEFPVP 285
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhA PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36 Identity = 71/105 (67.62%), Postives = 88/105 (83.81%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810 +SNSLST+DIV QS YG GWN+ RQPIGF++F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SS+ V VLY GG +L IP ++ Sbjct: 186 MSNSLSTIDIVNQQSGYGILGWNVIRQPIGFMLFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSSILVAVLYFGGWDLPIPATMIA 290
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9311) GN=ndhA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36 Identity = 71/106 (66.98%), Postives = 86/106 (81.13%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSW 813 +SNSLSTVDIV Q+ G WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY+ SY+NL++S+L V++LYLGG IP V W Sbjct: 186 MSNSLSTVDIVNQQTGAGVLSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYINLVLSALLVSILYLGGWGFPIP---VEW 288
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROMP (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36 Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSWA 816 ++NSLST+DIV QS G WN+WRQP+GFI+F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V++LYLGG IP ++ A Sbjct: 186 MTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIPVEIIAKA 292
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROMM (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhA PE=3 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36 Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSW 813 +SNSLSTVDIV Q+ G WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SSL V VLYLGG IP V W Sbjct: 186 MSNSLSTVDIVAQQNGAGLLSWNVWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLVLSSLLVAVLYLGGWGFPIP---VEW 288
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROM9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36 Identity = 69/100 (69.00%), Postives = 84/100 (84.00%), Query Frame = 1 Query: 496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIP 795 ++NSLST+DIV QS G WN+WRQP+GFIVF I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V++LYLGG IP Sbjct: 186 MTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIVFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIP 285 The following BLAST results are available for this feature:
BLAST of CK939927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939927 ID=CK939927; Name=CK939927; organism=Citrus sinensis; type=EST; length=816bpback to top |