CK939927

Overview
NameCK939927
Unique NameCK939927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PLEBO (NAD(P)H-quinone oxidoreductase subunit 1 OS=Plectonema boryanum GN=ndhA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.590e-36
Identity = 71/105 (67.62%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            +SNSLSTVDIV  Q+ YG  GWN+WRQP+GFI+F I++LAECER+PFDLPEAEEELVAGYQTEYSG+KF LFY+ SY+NL +S+L   VLYLGG    I    +S
Sbjct:  186 MSNSLSTVDIVNQQAGYGILGWNIWRQPVGFIIFWIAALAECERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYVNLTLSALLFAVLYLGGWEFPISLSVIS 290          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP4 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.590e-36
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPY-IFVSW 813
            +SNSLSTVDIV  QS  G  GWN+WRQP+G I+F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V +LYLGG +  IP  +  SW
Sbjct:  186 MSNSLSTVDIVNQQSGLGILGWNVWRQPVGLILFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSALMVAILYLGGWDFPIPLNLVASW 292          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH8102) GN=ndhA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.418e-36
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSW 813
            +SNSLSTVDIVG Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+A Y+NL++S++ V+VLYLGG    IP   V W
Sbjct:  187 MSNSLSTVDIVGQQTGAGILSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLAGYINLVLSAVLVSVLYLGGWGFPIP---VEW 289          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROMT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 777
            +SNSLSTVDIV  Q+  GF  WN+WRQP+GFI+F I +LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY+A Y+NL++S+L V+VLYLGG
Sbjct:  186 MSNSLSTVDIVEQQNTAGFLSWNIWRQPVGFIIFWICALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLAGYINLVLSALLVSVLYLGG 279          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36
Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIP 795
            +SNSLST+DIV  QS YG  GWN+WRQP+GF +F I++LAECERLPFDLPEAEEE+VAGYQTEY+G+KF LFY+ SY+NL++S+L   +LYLGG    +P
Sbjct:  186 MSNSLSTIDIVEQQSGYGILGWNIWRQPVGFFIFWIAALAECERLPFDLPEAEEEIVAGYQTEYAGMKFALFYLGSYVNLVLSALVFAILYLGGWEFPVP 285          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36
Identity = 71/105 (67.62%), Postives = 88/105 (83.81%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            +SNSLST+DIV  QS YG  GWN+ RQPIGF++F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SS+ V VLY GG +L IP   ++
Sbjct:  186 MSNSLSTIDIVNQQSGYGILGWNVIRQPIGFMLFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSSILVAVLYFGGWDLPIPATMIA 290          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9311) GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36
Identity = 71/106 (66.98%), Postives = 86/106 (81.13%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSW 813
            +SNSLSTVDIV  Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY+ SY+NL++S+L V++LYLGG    IP   V W
Sbjct:  186 MSNSLSTVDIVNQQTGAGVLSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYINLVLSALLVSILYLGGWGFPIP---VEW 288          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROMP (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSWA 816
            ++NSLST+DIV  QS  G   WN+WRQP+GFI+F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V++LYLGG    IP   ++ A
Sbjct:  186 MTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIPVEIIAKA 292          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROMM (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhA PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVSW 813
            +SNSLSTVDIV  Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SSL V VLYLGG    IP   V W
Sbjct:  186 MSNSLSTVDIVAQQNGAGLLSWNVWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLVLSSLLVAVLYLGGWGFPIP---VEW 288          
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PROM9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36
Identity = 69/100 (69.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIP 795
            ++NSLST+DIV  QS  G   WN+WRQP+GFIVF I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V++LYLGG    IP
Sbjct:  186 MTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIVFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIP 285          
The following BLAST results are available for this feature:
BLAST of CK939927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_PLEBO2.590e-3667.62NAD(P)H-quinone oxidoreductase subunit 1 OS=Plecto... [more]
NU1C_CYAP42.590e-3667.29NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_SYNPX4.418e-3666.98NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROMT5.770e-3674.47NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_CYAA55.770e-3667.00NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_ACAM15.770e-3667.62NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryo... [more]
NU1C_SYNS37.536e-3666.98NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROMP7.536e-3664.49NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROMM7.536e-3667.92NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROM97.536e-3669.00NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004743_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939927 ID=CK939927; Name=CK939927; organism=Citrus sinensis; type=EST; length=816bp
GCGGGTCTCAGANNNAAGAAGAGGAACAAAAANNNAGAAAAAATACAATT
ACAATCTAAAAGAATCCTTTCTTTCATATATTGATAGAAATCAAATTCGT
GTCATGATTCATGAACTAGTGTAATGGCGAATTCTTTTTCGTAATCGAAA
ATAAAAGGATGGGTTGAAATATCGAGTGATATTTCTACAAGAGTATTTTA
TTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTTGAAATTCGTA
AAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTTAGAGCAGACA
GAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTTGACTTTATCC
ATCCTATAACCATATAAAAATCAAAATAACTAATACCGGTCCGGTCCTTA
CATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAATCTCATGTACG
GTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGACTATGATTATC
TAACAGTTTAAGTACAGTTGATATAGTTGGGGCGCAATCAAAATATGGTT
TTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTATCGTTTTTCTA
ATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATTTACCAGAAGC
GGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCAGGAATAAAAT
TTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGTTTCCTCATTA
TTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCATTCCATACAT
ATTTGTTTCCTGGGCT
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