CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.401e-31
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N L+    AP IPA  FT+LTRLDHNRA+   +    V V+++  + IWGNHS +QYPD+ HA V   +G     +   D  WL  +FI TV +RG AII+AR             DHI DWV GTP+G W S+ + S G+Y V  GL+
Sbjct:  136 PANTNALVASAHAPDIPADRFTALTRLDHNRAVAATARHSGVPVTEISRMTIWGNHSPTQYPDIFHAVVGGRSG----ADYAADTRWLTDDFIPTVARRGTAIIEARGASSAASAANGAIDHIDDWVHGTPDGDWTSVALPSPGAYGVDEGLV 284          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_DIAST (Malate dehydrogenase OS=Diaphorobacter sp. (strain TPSY) GN=mdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.401e-31
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRA  Q++ K   +V D+K + +WGNHS + Y D   ATV+     K V++ + D AW    F+ TV +RGAAII AR             DH+RDW LG+ +G WV+MGV S+G Y +PAG++
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKGGFKVGDIKKLTVWGNHSPTMYADYRFATVD----GKSVKDAINDQAWNKDVFLPTVGKRGAAIIAARGLSSAASAANAAIDHMRDWALGS-KGEWVTMGVPSNGEYGIPAGIV 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.433e-30
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPS---IPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I KE A     +PAK FT + RLDHNRAL Q++ K   +VS +KN+++WGNHS + Y D      N  +    V++L+ D AW    F+ TV +RGAAII+AR             DHIRDWVLG+  G WV+MG+ SDGSY +P G+I
Sbjct:  133 PCNTNAYIAKEVAQKYGRVPAKNFTGMLRLDHNRALSQLAGKSGREVSSLKNLVVWGNHSPTMYADYRFVKSNGDS----VKDLINDAAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGS-NGEWVTMGIPSDGSYGIPEGVI 283          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.444e-30
Identity = 67/153 (43.79%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  + FT++ RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I
Sbjct:  134 PANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSTKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS----IADAINDQEWNANTFIPTVGKRGAAIIEARGSSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_STRM5 (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.444e-30
Identity = 67/153 (43.79%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  + FT++ RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I
Sbjct:  134 PANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSAKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS----IADAINDQEWNANTFIPTVGKRGAAIIEARGSSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_DELAS (Malate dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.444e-30
Identity = 68/153 (44.44%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRA  Q++ K   +V D++ + +WGNHS + Y D   ATVN   GE  V+  + D AW    F+ TV +RGAAII AR             DH+RDW LG+  G WV+MGV S+G Y +PAG++
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKAGFKVGDIRKLTVWGNHSPTMYADYRFATVN---GES-VKAKINDQAWNKDVFLPTVGKRGAAIIAARGLSSAASAANAAIDHMRDWALGS-GGEWVTMGVPSNGEYGIPAGIV 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.444e-30
Identity = 67/153 (43.79%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   AT    A  + + +L+ D+ W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRVAT----AEGQDLTKLINDEEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 67/153 (43.79%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  K FT++ RLDHNRAL QI+ K    V+ ++ + +WGNHS + Y D   AT++     + V+ ++ DD W    F+ TV +RGAAII+AR             DHIRDWVLGT  G WV+MGV SDGSY +P G++
Sbjct:  132 PANTNAWIAMKSAPDLDPKNFTAMLRLDHNRALSQIAAKTGKPVASIEKLAVWGNHSPTMYADYRFATID----GQSVKAMINDDVWNRDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVM 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVP 448
            P   N  I  + AP +PAK FT++ RLDHNRAL Q++ K    V+D++ + +WGNHS + Y D   AT+N   GE  V++++ D  W    F+ TV +RGAAII AR             DH+RDW LGT  G WV+MG+ SDG Y +P
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLASKTGKAVADIEKMAVWGNHSPTMYADYRFATIN---GES-VKDMINDQDWNANTFLPTVGKRGAAIIAARGVSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGQYGIP 278          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.446e-30
Identity = 61/153 (39.87%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  IL+ FAP +P    +++ RLDHNRA+  ++++ NV V  + ++++WGNHS + +PD  HA +    G + V++L+ D+ W    FI  V QRG AII+AR             D +RDW+ G+ +G WVSM V SDGSY +  GL+
Sbjct:  133 PANTNASILRRFAPDLPDDAISAMIRLDHNRAVSMLAQRCNVDVDSIADMVVWGNHSPTMFPDYRHARI----GRRLVKDLINDENWYRESFIPKVAQRGTAIIEARGASSAASAANAAIDQMRDWIFGS-DGRWVSMSVPSDGSYGIAPGLM 280          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_MYCVP8.401e-3143.79Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH_DIAST8.401e-3143.79Malate dehydrogenase OS=Diaphorobacter sp. (strain... [more]
MDH_AZOSB1.433e-3045.51Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_STRMK2.444e-3043.79Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_STRM52.444e-3043.79Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_DELAS2.444e-3044.44Malate dehydrogenase OS=Delftia acidovorans (strai... [more]
MDH_BURXL2.444e-3043.79Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_CHRVO4.170e-3043.79Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH1_RHOFD4.170e-3044.30Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]
MDH2_BURTA5.446e-3039.87Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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