CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_METCA (Malate dehydrogenase OS=Methylococcus capsulatus GN=mdh PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.112e-30
Identity = 68/153 (44.44%), Postives = 88/153 (57.52%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP +    F+++TRLDHNRA   ++      V+++  V+IWGNHS +QYPD++HA V      KP   LV D AW    FI TVQQRGA++I  R             DH+R W LGTP+  WVSM V SDGSY +  GL+
Sbjct:  132 PANTNALIAQRNAPDLAPGCFSAMTRLDHNRATSLLARHCGCNVAEISRVVIWGNHSPTQYPDLHHARVK----GKPALSLV-DPAWYVETFIPTVQQRGASVIAIRGKSSAASAANAALDHMRSWFLGTPKDDWVSMTVSSDGSYGIAEGLM 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_VEREI (Malate dehydrogenase OS=Verminephrobacter eiseniae (strain EF01-2) GN=mdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.584e-29
Identity = 64/153 (41.83%), Postives = 89/153 (58.17%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRA+ QI+ K    V+D++ + +WGNHS + Y D   AT    AG + V  ++ D AW    F+ TV +RGAAII+AR             DH+RDW LG+  G WV+MG+ SDG Y +P  ++
Sbjct:  135 PANTNAFIAMQSAPDLPRKNFTAMLRLDHNRAVSQIAAKTGQAVADIEKLTVWGNHSPTMYADYRFAT----AGGQSVAAMINDQAWNANVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGS-NGRWVTMGIASDGQYGIPKDIV 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.584e-29
Identity = 65/151 (43.05%), Postives = 89/151 (58.94%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG 454
            P   N  I  + AP +P   FT++ RLDHNRA  Q++ +    V+ V+ +I+WGNHS + YPD+   TV+     +P  +LV D+AW   E+I  V +RGAAII+AR             DH+ DW LGT  G WV+MG+ SDGSY +P G
Sbjct:  135 PANTNAWIAMKSAPDLPKGNFTAMLRLDHNRAKSQLATRTGKPVASVEKMIVWGNHSPTMYPDIRFCTVD----GQPAVKLVNDEAWYRNEYIPKVGKRGAAIIEARGLSSAASAANAAIDHMHDWALGT-NGKWVTMGLPSDGSYGIPEG 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.584e-29
Identity = 65/150 (43.33%), Postives = 87/150 (58.00%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPA 451
            P   N  I  + AP +PAK FT++ RLDHNRA  QI+ K    V+ ++ + +WGNHS + Y D   AT+    G + V++++ DD W    F+ TV +RGAAII AR             DH+RDW LGT  G WV+MGV S G Y +PA
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGKPVASIEKLAVWGNHSPTMYADYRFATI----GGESVKDMINDDVWNRDVFLPTVGKRGAAIIAARGVSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSKGEYGIPA 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_RALEH (Malate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.069e-29
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPA 451
            P   N  I  + AP++P + FT++ RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV+     K V++L+ D  W N  F+ TV +RGAAII+AR             DH+RDWVLGT  G  V+MG+ S+G Y +PA
Sbjct:  133 PANTNAYIAMKSAPNLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATVD----GKSVKDLINDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKVVTMGIPSNGEYGIPA 277          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.703e-29
Identity = 64/153 (41.83%), Postives = 89/153 (58.17%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRA  QI+ K   +V +++ + +WGNHS + Y D   AT+    G K V++ + D  W    F+ TV +RGAAII+AR             DH+RDW LG+  G WV+MGV S G Y +P G++
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGGKVGEIEKLTVWGNHSPTMYADYRFATI----GGKSVKDAINDQVWNADVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGS-NGKWVTMGVPSKGEYGIPEGIV 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_XANOR (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.610e-29
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  K FT++ RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +  G+I
Sbjct:  134 PANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS----IGDAINDQEWNASTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_XANOM (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.610e-29
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  K FT++ RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +  G+I
Sbjct:  134 PANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS----IGDAINDQEWNASTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.610e-29
Identity = 64/149 (42.95%), Postives = 87/149 (58.39%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVP 448
            P   N  I  + AP +P K FT++ RLDHNRA  QI+ K    VS +K + +WGNHS + Y D   AT++ A+    V++++ D  W    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV S+G Y +P
Sbjct:  135 PANTNAYIAMKAAPDLPRKNFTAMLRLDHNRAASQIAAKTGKPVSSIKQLAVWGNHSPTMYADYRFATIDGAS----VKDMINDQVWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSNGEYGIP 278          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.021e-29
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPA 451
            P   N  I  + AP +PAK FT++ RLDHNRA  QI+ K    V+D++ + +WGNHS + Y D   AT+    G + V +++ D  W    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MG+ S G Y +PA
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGKAVADIEKLTVWGNHSPTMYADYRFATI----GGESVAQMINDQEWNANVFLPTVGKRGAAIIEARGSSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSGGEYGIPA 279          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_METCA7.112e-3044.44Malate dehydrogenase OS=Methylococcus capsulatus G... [more]
MDH_VEREI1.584e-2941.83Malate dehydrogenase OS=Verminephrobacter eiseniae... [more]
MDH_SYNFM1.584e-2943.05Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]
MDH_LEPCP1.584e-2943.33Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_RALEH2.069e-2944.00Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_ACIAC2.703e-2941.83Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH_XANOR4.610e-2943.14Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOM4.610e-2943.14Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_METPP4.610e-2942.95Malate dehydrogenase OS=Methylibium petroleiphilum... [more]
MDH_POLNA6.021e-2942.67Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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