CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_COXBU (Malate dehydrogenase OS=Coxiella burnetii GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.288e-28
Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP   F ++TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D  WL  +FI+ +QQRGAA+IKAR             D +   +  TP     S+ + + G Y V  GLI
Sbjct:  132 PCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRDKNWLLNDFISVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.903e-28
Identity = 65/145 (44.83%), Postives = 93/145 (64.14%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS 436
            P   N LIL + AP I  +  T++ RLDHNRAL Q+++K+    SDV+ +++WGNHS+SQ+PD+++A +   AGEK  + +  ++ W     I  +QQRGAA+IKAR             DH+R+WVLG+  G WVSMGVYS G+
Sbjct:  132 PANTNALILLKNAPYINPRNITAMMRLDHNRALFQVAKKMGCHCSDVEKMVVWGNHSASQFPDISYAEI---AGEKVAKGV--ENNWHGDNLIPIIQQRGAAVIKARGASSAASAASAAIDHMRNWVLGS-GGKWVSMGVYSRGN 270          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_COXBR (Malate dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.903e-28
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP   F ++TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D  WL  +FI  +QQRGAA+IKAR             D +   +  TP     S+ + + G Y V  GLI
Sbjct:  132 PCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRDKNWLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_COXBN (Malate dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.903e-28
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP   F ++TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D  WL  +FI  +QQRGAA+IKAR             D +   +  TP     S+ + + G Y V  GLI
Sbjct:  132 PCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRDKNWLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_COXB1 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuK_Q154) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.903e-28
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP   F ++TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D  WL  +FI  +QQRGAA+IKAR             D +   +  TP     S+ + + G Y V  GLI
Sbjct:  132 PCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRDKNWLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_COXB2 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.097e-28
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP   F ++TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D  WL  +FI  +QQRGAA+IKAR             D +   +  TP     S+ + + G Y V  GLI
Sbjct:  132 PCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRDKNWLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGRYGVDEGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVP 448
            P   N  I  + AP +P + FT++ RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +AT++     + V++++ D  W N  F+ TV +RGAAII+AR             DH+RDWVLG+  G  V+MG+ S+G Y +P
Sbjct:  135 PANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATID----GQSVKDMINDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKIVTMGIPSNGDYEIP 278          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.937e-27
Identity = 62/133 (46.62%), Postives = 82/133 (61.65%), Query Frame = 2
Query:   62 FTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            +  + RLDHNRAL Q++ K    VS +K +++WGNHS + Y D    T N  +    V+ LV D AW N  F+ TV +RGAAII+AR             DH+RDWVLG+ E  WV+MGV SDGSY +PAG++
Sbjct:  156 YHGMLRLDHNRALSQLAGKTGRAVSSLKKLVVWGNHSPTMYADYRFCTSNGDS----VKALVNDHAWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSDE--WVTMGVPSDGSYGIPAGIV 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.612e-27
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVP 448
            P   N  I  + AP++  + FT++ RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV+     K V++++ D  W N  F+ TV +RGAAII+AR             DH+ DWVLG+  G  V+MG+ S+G Y +P
Sbjct:  133 PANTNAYIAMKSAPNLKRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKMFVWGNHSPTMYADYRYATVD----GKSVKDMINDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVHDWVLGS-NGKVVTMGIPSNGEYGIP 276          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_COREF (Malate dehydrogenase OS=Corynebacterium efficiens GN=mdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.612e-27
Identity = 64/153 (41.83%), Postives = 89/153 (58.17%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP +P   F ++ RLDHNRA+ Q++ K     S+ ++V++WGNHS++Q+PD+ +ATV    GEK V +LV  D W   EFI  V +RGA II+ R             DH+RDW+ GT   TW S  + S G+Y +P G+I
Sbjct:  132 PANTNALIAMSNAPDVPQSRFNAMMRLDHNRAISQLATKTGRLSSEFQDVVVWGNHSAAQFPDITYATV---GGEK-VSDLVDHD-WYVNEFIPRVAKRGAEIIEVRGKSSAASAASSAVDHMRDWIQGTE--TWASAAIPSTGAYGIPEGII 277          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_COXBU2.288e-2843.79Malate dehydrogenase OS=Coxiella burnetii GN=mdh P... [more]
MDH_DESPS3.903e-2844.83Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH_COXBR3.903e-2843.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXBN3.903e-2843.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB13.903e-2843.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB25.097e-2843.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_RALSO1.483e-2740.94Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_DECAR1.937e-2746.62Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]
MDH_RALME9.612e-2740.94Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_COREF9.612e-2741.83Malate dehydrogenase OS=Corynebacterium efficiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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