CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEPBP (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.255e-26
Identity = 65/153 (42.48%), Postives = 86/153 (56.21%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  +P+  + ++T LD NRA  Q+++K  V V DV NV IWGNHS++QYPD  +A VN     KP  +++ D  WL G+FI+TVQ+RGAAII AR             D + + V  T  G W S   +S+G Y V  GLI
Sbjct:  132 PCNTNALIAMNNAKGVPSDRWFAMTGLDENRAKTQLAQKAGVLVKDVSNVAIWGNHSATQYPDFFNAKVN----GKPATDVISDHDWLKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEPBA (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.255e-26
Identity = 65/153 (42.48%), Postives = 86/153 (56.21%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  +P+  + ++T LD NRA  Q+++K  V V DV NV IWGNHS++QYPD  +A VN     KP  +++ D  WL G+FI+TVQ+RGAAII AR             D + + V  T  G W S   +S+G Y V  GLI
Sbjct:  132 PCNTNALIAMNNAKGVPSDRWFAMTGLDENRAKTQLAQKAGVLVKDVSNVAIWGNHSATQYPDFFNAKVN----GKPATDVISDHDWLKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 64/152 (42.11%), Postives = 87/152 (57.24%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGL 457
            P   N LI    AP +PA  F ++ RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD+ +ATV    GEK V +LV  D W   EFI  V  RGA II+ R             DH+RDWV GT    W S  + S G+Y +P G+
Sbjct:  137 PANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLVDHD-WYVEEFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 64/152 (42.11%), Postives = 87/152 (57.24%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGL 457
            P   N LI    AP +PA  F ++ RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD+ +ATV    GEK V +LV  D W   EFI  V  RGA II+ R             DH+RDWV GT    W S  + S G+Y +P G+
Sbjct:  137 PANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLVDHD-WYVEEFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.063e-25
Identity = 66/154 (42.86%), Postives = 86/154 (55.84%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLI 460
            P   N LI    APS+  + F ++TRLD NRA   +S+K  V   DV  V IWGNHS++Q PD     VN    +KPV  ++ D  WL  +FI +VQ+RGAAII+AR             D +RD +L TP G W S  + SDG+ Y +  GLI
Sbjct:  132 PCNTNCLIALNNAPSLKRENFYAMTRLDQNRATFFLSQKSQVSTKDVSCVTIWGNHSATQVPDF----VNAKISQKPVETIIPDRQWLEKDFIESVQKRGAAIIQARGKSSAASAASALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_AZOSE (Malate dehydrogenase OS=Azoarcus sp. (strain EbN1) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.388e-25
Identity = 59/133 (44.36%), Postives = 79/133 (59.40%), Query Frame = 2
Query:   62 FTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            +  + RLDHNRAL Q++ K    VS +K +++WGNHS + Y D    T N  +    V+ LV D AW N  F+ TV +RGAAII AR             DH+ DW LG+ +  WV+MGV SDGSY +PAG++
Sbjct:  156 YHGMLRLDHNRALSQLAAKTGRPVSSLKKMVVWGNHSPTMYADYRFCTSNGDS----VKALVNDHAWNNDVFLPTVGKRGAAIIDARGLSSAASAANAAIDHMHDWALGSDD--WVTMGVPSDGSYGIPAGVV 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.813e-25
Identity = 60/138 (43.48%), Postives = 80/138 (57.97%), Query Frame = 2
Query:   47 IPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            +P + F+++ RLD NRA   ++ K   QV DV NV+IWGNHS++Q PD   A +    G KPV E++ D AWL   F+ TVQ RGAA+IKAR             DH+R  +  TP G      V ++G+Y V AGLI
Sbjct:  145 VPHERFSAMMRLDQNRAKYLLASKAGAQVIDVTNVVIWGNHSNNQVPDFEFAKI----GGKPVPEVIADAAWLENAFMPTVQNRGAAVIKARGASSAASAANAALDHVRSLITPTPAGDTFCAAVMANGAYGVDAGLI 278          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.813e-25
Identity = 64/145 (44.14%), Postives = 83/145 (57.24%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS 436
            P   N LI  + AP IPAK F +LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E++KD  WL  EF  TVQ+RG A+I+               D I+  V  TPEG W S GVY+ G+
Sbjct:  214 PCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID----GRPVKEVIKDTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGN 354          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.368e-25
Identity = 64/145 (44.14%), Postives = 83/145 (57.24%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS 436
            P   N LI  + AP+IPAK F +LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E++KD  WL  EF  TVQ+RG  +I+               D IR  V  TPEG W S GVY+ G+
Sbjct:  217 PCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID----GRPVKEVIKDTKWLEEEFTLTVQKRGGVLIQKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTTGN 357          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH1_BURVG (Malate dehydrogenase 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.368e-25
Identity = 56/153 (36.60%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  + + +AP +PA   T++ RLDHNRA+ +++ +  V V  V  + +WGNHS + +PD  HA ++    ++P    V D+ W    FI  V +RG AII+AR             D +RDW+ G+  G WVSM + S G Y +P GL+
Sbjct:  133 PANTNAWVARHYAPDLPADAITAMIRLDHNRAVSKLAARCGVTVDAVSRMAVWGNHSPTMFPDYRHALID----QQPAPMRVGDERWYLDTFIPEVARRGTAIIEARGASSAASAANAAIDQMRDWIRGS-GGRWVSMSIVSGGEYGIPRGLM 280          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_LEPBP1.255e-2642.48Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_LEPBA1.255e-2642.48Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_CORGL1.640e-2642.11Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORGB1.640e-2642.11Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_PARUW1.063e-2542.86Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH_AZOSE1.388e-2544.36Malate dehydrogenase OS=Azoarcus sp. (strain EbN1)... [more]
MDH_MAGSM1.813e-2543.48Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]
MDHP1_SORBI1.813e-2544.14Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
MDHP_MAIZE2.368e-2544.14Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDH1_BURVG2.368e-2536.60Malate dehydrogenase 1 OS=Burkholderia vietnamiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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