CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEPBL (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.997e-25
Identity = 63/153 (41.18%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  IP+  + ++T+LD NRA  Q++ K  V V +V ++ IWGNHSS+QYPD  +A ++     KPV +++ D  WL G+FI  VQQRGA IIKAR             D +R  +  T  G   S  + SDGSY    GLI
Sbjct:  132 PCNTNCLIAMNNAKGIPSDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSSTQYPDFYNAKISG----KPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGSYGTEKGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEPBJ (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.997e-25
Identity = 63/153 (41.18%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  IP+  + ++T+LD NRA  Q++ K  V V +V ++ IWGNHSS+QYPD  +A ++     KPV +++ D  WL G+FI  VQQRGA IIKAR             D +R  +  T  G   S  + SDGSY    GLI
Sbjct:  132 PCNTNCLIAMNNAKGIPSDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSSTQYPDFYNAKISG----KPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGSYGTEKGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.175e-24
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS 436
            P   N LI  + AP+IPAK F +LTRLD NRA  Q++ K  V    V N+ IWGNHS++Q PD  +A ++      PV+E++KD  WL  EF   VQ+RG A+I+               D IR  ++ TPEG W S GVY+ G+
Sbjct:  222 PCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGL----PVKEVIKDHKWLEEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVYTTGN 362          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.004e-24
Identity = 62/145 (42.76%), Postives = 82/145 (56.55%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS 436
            P   N LI  +  P+IPAK F +LTRLD NRA  QI+ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E+++D  WL  EF  TVQ+RG  +I+               D I+  V  TPEG W S GVY+ G+
Sbjct:  217 PCNTNALICLKNTPNIPAKNFHALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID----GRPVKEIIQDTKWLEEEFTMTVQKRGGVLIQKWGRSSAASTAVSIVDAIKSLVTPTPEGEWFSTGVYTTGN 357          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.618e-24
Identity = 61/145 (42.07%), Postives = 83/145 (57.24%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS 436
            P   N LI  + AP+IPAK F +LTRLD NRA  Q++ K  V    V N+ IWGNHS++Q PD  +A ++      PV+E++KD+ WL  EF   VQ+RG  +I+               D IR  +  TPEG W S GVY++G+
Sbjct:  226 PCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGL----PVKEVIKDNKWLEEEFTEKVQKRGGVLIQKWGRSSAASTSVSIVDAIRSLITPTPEGDWFSSGVYTNGN 366          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_RUBXD (Malate dehydrogenase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.616e-24
Identity = 61/153 (39.87%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP +P + F+++TRLD NRA+  +++KL V V DV+++++WGNHS + +PD+ +A V    G++ V +LV+ + W   E+I  V +RGA II+AR             DH+RDW+LG    +  SM V S G Y V  GL+
Sbjct:  130 PANTNCLIAMNNAPDVPRERFSAMTRLDENRAVSMLAQKLGVGVEDVRDLVVWGNHSPTMFPDLFNARVK---GQRAV-DLVEME-WYENEYIPRVGKRGAEIIEARGASSAASAANAAIDHVRDWMLGA--DSLHSMAVASSGQYGVEEGLV 275          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEPIN (Malate dehydrogenase OS=Leptospira interrogans GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.616e-24
Identity = 63/153 (41.18%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  I    + ++T+LD NRA  Q++ K  V V +V ++ IWGNHS++QYPD      NT    KPV +++ D  WL G+FI  VQQRGA IIKAR             D +R  +  T  G   S  V SDGSY    GLI
Sbjct:  132 PCNTNCLIAMNNAKGISQDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSATQYPDF----YNTKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEPIC (Malate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.616e-24
Identity = 63/153 (41.18%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  I    + ++T+LD NRA  Q++ K  V V +V ++ IWGNHS++QYPD      NT    KPV +++ D  WL G+FI  VQQRGA IIKAR             D +R  +  T  G   S  V SDGSY    GLI
Sbjct:  132 PCNTNCLIAMNNAKGISQDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSATQYPDF----YNTKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.299e-23
Identity = 62/145 (42.76%), Postives = 79/145 (54.48%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS 436
            P   N LI  + AP+IP K F +LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++      PV E+++D  WL  EF   VQ RG  +IK               D IR  V  TPEG W S GVY++G+
Sbjct:  238 PCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGI----PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGN 378          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.299e-23
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 2
Query:   47 IPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            IPA+ F +L RLDHNRAL Q++ K    V  VK + +WGNHS + Y D    T++  +    V  ++ + AW +   + TV +RG AI+ AR             D +RDW LGT  G W +MGV SDG+Y VPAGL+
Sbjct:  151 IPARNFAALLRLDHNRALAQLALKTGRPVGGVKRLAVWGNHSPTVYADDRFTTIDGDS----VPAIIDNIAWHHDTLVRTVDKRGEAILAARGLYAEASAASAAIDQMRDWWLGT-RGEWTTMGVVSDGAYGVPAGLV 283          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_LEPBL8.997e-2541.18Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPBJ8.997e-2541.18Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDHP_MEDSA1.175e-2442.76Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP2_SORBI2.004e-2442.76Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP_PEA2.618e-2442.07Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDH_RUBXD7.616e-2439.87Malate dehydrogenase OS=Rubrobacter xylanophilus (... [more]
MDH_LEPIN7.616e-2441.18Malate dehydrogenase OS=Leptospira interrogans GN=... [more]
MDH_LEPIC7.616e-2441.18Malate dehydrogenase OS=Leptospira interrogans ser... [more]
MDHP_FLABI1.299e-2342.76Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDH2_RHOFD1.299e-2342.03Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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