CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.780e-23
Identity = 61/154 (39.61%), Postives = 84/154 (54.55%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLI 460
            P   N LI  + AP+IPAK F  LTRLD NRA  Q++ K  V    V N+ IWGNHS++Q PD  +A ++      PV+ ++KD  WL  EF   +Q+RG A+I+               D I+  V  TPEG W S  VY++G+ Y +   L+
Sbjct:  225 PCNTNALICLKNAPNIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGL----PVKTVIKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSSAVYTNGNPYGIAEDLV 374          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.200e-22
Identity = 62/154 (40.26%), Postives = 80/154 (51.95%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLI 460
            P   N LI  +  P+IPAK F SLTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD     VN   G  PV+E++K   WL  EF   V++RG  +I+               D I   +  TP G W   GVY++G+ Y +   LI
Sbjct:  219 PCNTNALICLKNPPNIPAKNFHSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDF----VNAQIGGVPVKEVIKAQKWLEEEFTEKVRKRGGVLIQKWGRSSAASTAVSIVDAINPLITPTPPGDWFPSGVYTNGNPYGIAEDLI 368          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEGPH (Malate dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 57/153 (37.25%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  +P+  F ++T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +      +++ D+ WL   F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI
Sbjct:  133 PCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTS----AAQVINDETWLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEGPC (Malate dehydrogenase OS=Legionella pneumophila (strain Corby) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 57/153 (37.25%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  +P+  F ++T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +      +++ D+ WL   F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI
Sbjct:  133 PCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTS----AAQVINDETWLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEGPA (Malate dehydrogenase OS=Legionella pneumophila (strain Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 57/153 (37.25%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  +P+  F ++T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +      +++ D+ WL   F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI
Sbjct:  133 PCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTS----AAQVINDETWLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_LEGPL (Malate dehydrogenase OS=Legionella pneumophila (strain Lens) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.538e-21
Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  +P+  F ++T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +  +    ++ D  WL   F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI
Sbjct:  133 PCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTSAAR----VINDQTWLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLTR (Malate dehydrogenase OS=Chlamydia trachomatis GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.803e-18
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I    AP +  K F ++ RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI
Sbjct:  133 PVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLTB (Malate dehydrogenase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.803e-18
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I    AP +  K F ++ RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI
Sbjct:  133 PVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLTA (Malate dehydrogenase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.803e-18
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I    AP +  K F ++ RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI
Sbjct:  133 PVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLT2 (Malate dehydrogenase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.803e-18
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I    AP +  K F ++ RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI
Sbjct:  133 PVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLI 281          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDHP_MESCR3.780e-2339.61Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_SPIOL3.200e-2240.26Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDH_LEGPH2.074e-2137.25Malate dehydrogenase OS=Legionella pneumophila sub... [more]
MDH_LEGPC2.074e-2137.25Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPA2.074e-2137.25Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPL3.538e-2137.25Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_CHLTR2.803e-1834.42Malate dehydrogenase OS=Chlamydia trachomatis GN=m... [more]
MDH_CHLTB2.803e-1834.42Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDH_CHLTA2.803e-1834.42Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDH_CHLT22.803e-1834.42Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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