CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.641e-36
Identity = 72/153 (47.06%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N L+    AP +PA+ FT+LTRLDHNRA+ Q++      V D+  V IWGNHSS+QYPD+ HA V    G++   ++  D  WL G+FI TV  RG+AII+AR             DH+ DWVLGTPEG W S+ + S G+Y VP GL+
Sbjct:  135 PANTNALVAANNAPDVPAERFTALTRLDHNRAIAQLARHSGAAVRDISRVTIWGNHSSTQYPDIFHARV----GDRSGADIAADREWLTGDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLV 283          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.674e-36
Identity = 76/153 (49.67%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q+++K   +V+D+  + IWGNHS++QYPD+ HA V      K   E+V D  W+  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMSNAPDIPRERFSALTRLDHNRAISQLAKKTGAKVTDITKMTIWGNHSATQYPDIFHAEVKG----KNAAEVVGDQNWIENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.480e-35
Identity = 77/153 (50.33%), Postives = 98/153 (64.05%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N +I +  AP +  + FT++TRLDHNRA+ Q++ K +  V+DVK +IIWGNHSS+QYPD+  +TVN     KP  +LV D AW  G +I  VQQRGAAIIKAR              H+R WV+GT E  WVSMGVYS+G Y +  GLI
Sbjct:  134 PANTNAVIAQRNAPDLDPRNFTAMTRLDHNRAMAQLAGKTDSTVNDVKKMIIWGNHSSTQYPDLTASTVN----GKPALDLV-DRAWYEGTYIPEVQQRGAAIIKARGASSAASAANAAIAHVRTWVMGTDENDWVSMGVYSNGEYGIAKGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_RHOSR (Malate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=mdh PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.524e-35
Identity = 72/153 (47.06%), Postives = 93/153 (60.78%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N L+    AP IPA+ FT+LTRLDHNRA+ Q++      V D++ V IWGNHSS+QYPD+ HA V    G++   E   D  WL G+FI TV  RG+AII+AR             DH+ DWVLGTP+  W S+ + S G+Y VP GL+
Sbjct:  135 PANTNALVAANNAPDIPAERFTALTRLDHNRAIAQLARHSGAAVKDIRRVAIWGNHSSTQYPDIFHARV----GDRSGAEFAADREWLTGDFIPTVANRGSAIIEARGASSAASAANAAIDHVHDWVLGTPDDDWTSVALPSTGAYGVPEGLV 283          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.524e-35
Identity = 76/153 (49.67%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP +  + FT++TRLDHNRA+ Q++ K     +++KN+IIWGNHS++QYPD++   V   A       LV+ D W   +FI TVQQRGAAIIKAR             DHIRDWVLGTPEG W SM V SDGSY +  G+I
Sbjct:  132 PANTNSLIAQRNAPDLDPRNFTAMTRLDHNRAVAQLANKTGAHNTEIKNMIIWGNHSATQYPDISKTKVKGEAAPG----LVERD-WYENDFIPTVQQRGAAIIKARGASSAASAASSAIDHIRDWVLGTPEGEWTSMAVPSDGSYGIEKGII 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.524e-35
Identity = 71/146 (48.63%), Postives = 92/146 (63.01%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSY 439
            P   N LI+ ++APSIP + FT+LTRLDHNRA+ Q++ K  V  + VKNV IWGNHS+ Q+PD++HA V     + P +EL+ D+ W+   FI  VQ RGAA+I  RK            D +RDW  GT EG WVSM VYS G +
Sbjct:  132 PANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVCIWGNHSNKQFPDLSHAVVTKDGKQHPAKELINDEKWVKEVFIPCVQNRGAAVIGLRKLSRAASAAKAIVDQMRDWWFGTKEGEWVSMSVYSTGDH 277          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.296e-35
Identity = 67/153 (43.79%), Postives = 98/153 (64.05%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI  + AP +  + F+ + RLDHNRAL Q++ KLN  VS ++ +I+WGNHSS+Q+PD++HA ++     + V +L+KD  W+   FI TVQ RGA +I+AR             DH+RDW+ GT +  W++MG+ SDGSY +P G+I
Sbjct:  132 PANTNTLITMKNAPDLSPENFSGMLRLDHNRALSQVAMKLNQPVSHIRKMIVWGNHSSTQFPDLSHAEID----HQKVIDLIKDQTWVENSFIPTVQNRGAVVIEARGLSSAASAANAIIDHMRDWIFGTRDDDWITMGILSDGSYKIPKGVI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.296e-35
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDAW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+I
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGII 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.296e-35
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDAW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+I
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGII 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.296e-35
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDAW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+I
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGII 282          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_RHOOB6.641e-3647.06Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_MYCA18.674e-3649.67Malate dehydrogenase OS=Mycobacterium avium (strai... [more]
MDH_PSYCK1.480e-3550.33Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_RHOSR2.524e-3547.06Malate dehydrogenase OS=Rhodococcus sp. (strain RH... [more]
MDH_ALHEH2.524e-3549.67Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDHC_ECHGR2.524e-3548.63Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDH_NITEU3.296e-3543.79Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]
MDH_BORPE3.296e-3548.37Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA3.296e-3548.37Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR3.296e-3548.37Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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