CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_XYLF2 (Malate dehydrogenase OS=Xylella fastidiosa (strain M23) GN=mdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.411e-32
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  K FT++ RLDHNRAL Q+S KL   V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW    FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I
Sbjct:  134 PANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLGKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.818e-32
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G++
Sbjct:  134 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVM 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 5.818e-32
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G++
Sbjct:  134 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVM 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ACIBC (Malate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=mdh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.818e-32
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G++
Sbjct:  134 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVM 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ACIB5 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=mdh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.818e-32
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G++
Sbjct:  134 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVM 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.818e-32
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G++
Sbjct:  134 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVM 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 7.599e-32
Identity = 69/153 (45.10%), Postives = 93/153 (60.78%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  K FT++ RLDHNRAL Q+S KL+  V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW    FI TV +RGAAII+ R             DH+RDW+LG+  G W++MGV SDGSY +P G+I
Sbjct:  134 PANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAWNANSFIPTVSKRGAAIIEVRGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_KOCRD (Malate dehydrogenase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=mdh PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.599e-32
Identity = 72/153 (47.06%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP IPA  F++LTRLDHNRA+  ++ +    V DVK++ +WGNHS++QYPD++HA V   AG +P  +LV  + W+   FI TV +RGAAI++AR             DH RD +LG   G W SM V SDGSY VP GL+
Sbjct:  133 PANTNALIAQRNAPDIPASRFSALTRLDHNRAVAMLAAQTGASVDDVKHLSVWGNHSATQYPDLDHARV---AG-RPALDLVSRE-WVQDTFIPTVAKRGAAILEARGASSAASAANATIDHARDLMLGNHRGDWTSMSVVSDGSYGVPEGLV 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.599e-32
Identity = 68/149 (45.64%), Postives = 92/149 (61.74%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVP 448
            P   N  I  + AP++PAK FT++ RLDHNRAL QI+ K    V+ ++ + +WGNHS + YPD   AT++     K V+E + D+ W    F+ TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P
Sbjct:  135 PANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKTGKPVTAIEKLTVWGNHSPTMYPDYRFATID----GKSVKEAINDEVWNKDVFLPTVGKRGAAIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIP 278          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_ACIBS (Malate dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=mdh PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.599e-32
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G++
Sbjct:  134 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVVVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVM 281          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_XYLF23.411e-3245.75Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_ACIBY5.818e-3245.75Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBT5.818e-3245.75Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBC5.818e-3245.75Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB55.818e-3245.75Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB35.818e-3245.75Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_XYLFA7.599e-3245.10Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_KOCRD7.599e-3247.06Malate dehydrogenase OS=Kocuria rhizophila (strain... [more]
MDH_HERAR7.599e-3245.64Malate dehydrogenase OS=Herminiimonas arsenicoxyda... [more]
MDH_ACIBS7.599e-3245.75Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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