CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURM1 (Malate dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
[Close]
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +P K FT++ RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +I
Sbjct:  133 PANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDII 280
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_BURP62.888e-3145.75Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP12.888e-3145.75Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP02.888e-3145.75Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS2.888e-3145.75Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA2.888e-3145.75Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]
MDH_BURM92.888e-3145.75Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM72.888e-3145.75Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM12.888e-3145.75Malate dehydrogenase OS=Burkholderia multivorans (... [more]
MDH_BURCM2.888e-3145.75Malate dehydrogenase OS=Burkholderia ambifaria (st... [more]
MDH_BURCJ2.888e-3145.75Malate dehydrogenase OS=Burkholderia cepacia (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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