CK939885 | Citrus Genome Database

Overview


Name	CK939885
Unique Name	CK939885
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	843

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_BACWK (10 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 593
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ I+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAII 93

HSP 2 Score: 78.9518 bits (193), Expect = 3.786e-14
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNXXK 836
            LKPL DRV I++ +AEE TA G++L E +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG   K
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK 75

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_BACST (10 kDa chaperonin OS=Bacillus stearothermophilus GN=groS PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 593
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGERVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93

HSP 2 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNXXK 836
            LKPL DRV I+V E EE TA G++L + +KEKP  G V+AVG G + + G R    +  G+ +++SKYAG   K
Sbjct:    2 LKPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGERVAPEVEVGDRIIFSKYAGTEVK 75

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_BACLD (10 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 43/92 (46.74%), Postives = 68/92 (73.91%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 593
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G+VVA G G+ +    ++ + VK G ++I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKVVAAGSGRVLESGERVALEVKTGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 74.3294 bits (181), Expect = 9.325e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNXXK 836
            LKPL DRV I++ E+EE TA G++L +++KEKP  G V+A G G + E G R  L +  G+ +++SKYAG   K
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKVVAAGSGRVLESGERVALEVKTGDRIIFSKYAGTEVK 75

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_BACCR (10 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=groS PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 593
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNXXK 836
            LKPL DRV I++ +AEE TA G++L + +KEKP  G V+AVG G + E G R  L +A G+ +++SKYAG   K
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK 75

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_BACC4 (10 kDa chaperonin OS=Bacillus cereus (strain B4264) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 593
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNXXK 836
            LKPL DRV I++ +AEE TA G++L + +KEKP  G V+AVG G + E G R  L +A G+ +++SKYAG   K
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK 75

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_BACC2 (10 kDa chaperonin OS=Bacillus cereus (strain G9842) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 593
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNXXK 836
            LKPL DRV I++ +AEE TA G++L + +KEKP  G V+AVG G + E G R  L +A G+ +++SKYAG   K
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK 75

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_PROVI (10 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3

Query:  318 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 593
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + L++ VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLEMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94

HSP 2 Score: 70.8626 bits (172), Expect = 1.031e-11
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3

Query:  612 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 824
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVG G + + G    + +  G+ V+Y KY+G
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLEMPVKAGDKVLYGKYSG 72

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_LISMO (10 kDa chaperonin OS=Listeria monocytogenes GN=groS PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 590
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92

HSP 2 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 824
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSG 71

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_LISMH (10 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 590
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92

HSP 2 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 824
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSG 71

[Close]

BLAST of CK939885 vs. ExPASy Swiss-Prot
Match: CH10_LISMF (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3

Query:  321 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 590
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92

HSP 2 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 3

Query:  615 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 824
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSG 71

The following BLAST results are available for this feature:

BLAST of CK939885 vs. ExPASy Swiss-Prot

BLAST of CK939885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492


Match Name	E-value	Identity	Description
CH10_BACWK	8.707e-19	47.83	10 kDa chaperonin OS=Bacillus weihenstephanensis (...	[more]
CH10_BACST	8.707e-19	47.83	10 kDa chaperonin OS=Bacillus stearothermophilus G...	[more]
CH10_BACLD	8.707e-19	46.74	10 kDa chaperonin OS=Bacillus licheniformis (strai...	[more]
CH10_BACCR	8.707e-19	47.83	10 kDa chaperonin OS=Bacillus cereus (strain ATCC ...	[more]
CH10_BACC4	8.707e-19	47.83	10 kDa chaperonin OS=Bacillus cereus (strain B4264...	[more]
CH10_BACC2	8.707e-19	47.83	10 kDa chaperonin OS=Bacillus cereus (strain G9842...	[more]
CH10_PROVI	1.137e-18	49.46	10 kDa chaperonin OS=Prosthecochloris vibrioformis...	[more]
CH10_LISMO	1.137e-18	48.35	10 kDa chaperonin OS=Listeria monocytogenes GN=gro...	[more]
CH10_LISMH	1.137e-18	48.35	10 kDa chaperonin OS=Listeria monocytogenes seroty...	[more]
CH10_LISMF	1.137e-18	48.35	10 kDa chaperonin OS=Listeria monocytogenes seroty...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004744_C10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_C10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939885 ID=CK939885; Name=CK939885; organism=Citrus sinensis; type=EST; length=843bp
GGGGAAACAGAAGTGTCTAGGGTTTTATCTTCTCGACTCTTCTTCAAATT
TCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTC
CAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAG
CTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCA
TTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGC
TCCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCG
TGGCTCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTG
AAAATCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATC
TACAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGG
GGAAGACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGACC
CAGGTCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGC
AAATCATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAG
ATGAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTT
GCTGAGGCTGAGGAGACAACTGCTGGAGGTTTGCTGTTGACGGAGGCAAG
CAAGGAGAAACCTTCCATTGGAATGGTCATTGCTGTTGGACCCGGTCCTC
TAGATGAGGAAGGTAATAGGAAACCTCTATCCATTGCTCCAGGGAACACG
GTGATGTATTCAAAGTATGCAGGGAATNANNTCAAGGGCAGTG