EY666043

Overview
NameEY666043
Unique NameEY666043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 6.936e-67
Identity = 133/191 (69.63%), Postives = 144/191 (75.39%), Query Frame = 2
Query:  164 APS-GNELSNGGRISMRKTASK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            APS  + L    RI+MRKTA+K   + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLI   +               VEG RI G        P+ P G+F+PLGL ++PE F
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLI-HAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAF 206          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.183e-66
Identity = 129/179 (72.07%), Postives = 139/179 (77.65%), Query Frame = 2
Query:  194 GRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            GRI+MRK+A+K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLI   +               VEG RI G        P+ P GSF+PLGL ++PE F
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLI-HAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 202          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.970e-65
Identity = 129/198 (65.15%), Postives = 145/198 (73.23%), Query Frame = 2
Query:  158 NLAPSGNELSNGG------RISMRK-TASKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            ++ P  N+L   G      R++MRK T  KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LI   +               +EG R+ G        PI P G+F+PLGL ++P+ F
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLI-HAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAF 219          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.970e-65
Identity = 129/198 (65.15%), Postives = 145/198 (73.23%), Query Frame = 2
Query:  158 NLAPSGNELSNGG------RISMRK-TASKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            ++ P  N+L   G      R++MRK T  KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LI   +               +EG R+ G        PI P G+F+PLGL ++P+ F
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLI-HAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAF 219          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.208e-64
Identity = 133/191 (69.63%), Postives = 142/191 (74.35%), Query Frame = 2
Query:  146 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPE 718
            G+A+ LAPS  EL  G R+SMRKTA K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLI   +               VEG RI G        PI P GSF+PLGL ++PE
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLI-HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPE 195          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 5.495e-64
Identity = 121/179 (67.60%), Postives = 135/179 (75.42%), Query Frame = 2
Query:  188 NGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+   +               VEG R+GG         + P G+F+PLGL E+PE F
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLV-HAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.599e-63
Identity = 122/170 (71.76%), Postives = 129/170 (75.88%), Query Frame = 2
Query:  215 TASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG RI G        P+ P GSF+PLGL E PE F
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAF 169          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.599e-63
Identity = 120/178 (67.42%), Postives = 137/178 (76.97%), Query Frame = 2
Query:  191 GGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LI   +               VEG R+GG        PI P G+F+PLGL ++P+ F
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI-HAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAF 206          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.497e-61
Identity = 117/179 (65.36%), Postives = 134/179 (74.86%), Query Frame = 2
Query:  188 NGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LI   +               +EG R+GG         I P G+F+PLGL ++PE F
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI-HAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAF 206          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.334e-61
Identity = 123/187 (65.78%), Postives = 136/187 (72.73%), Query Frame = 2
Query:  176 NELSN---GGRISMRKTASKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            NELS     G   ++  A KS + SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+   +               VEG R+ G      E PI P GSF+PLGL ++PE F
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLV-HAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAF 206          
The following BLAST results are available for this feature:
BLAST of EY666043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB21_ORYSJ6.936e-6769.63Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ1.183e-6672.07Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY4.970e-6565.15Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY4.970e-6565.15Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_SOYBN4.208e-6469.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SILPR5.495e-6467.60Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PEA1.599e-6371.76Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_GOSHI1.599e-6367.42Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_TOBAC1.497e-6165.36Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_POLMU3.334e-6165.78Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-013-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666043 ID=EY666043; Name=EY666043; organism=Citrus sinensis; type=EST; length=870bp
GAACCTGCGGTACGGTCGGATTCCGGGTCGACCCACGCGTCCGGCTTCTC
TTGCTTACACAGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAATTAAAT
TCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAA
GGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCA
TCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGG
TACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCC
AAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCG
GGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTC
ATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGA
GCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGG
CGGGAGCCCAGATCTTCAGCGAGGGCGGGCTAGACTACTTGGGAAACCCA
AGCTTGATCCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGG
GTCTTGATGGGAACCCGTTGAGGGTAACAGAATTGGTGGGAAGGCCGCTC
GGTGAAATGAATGACCCATTGACCCAAGTGGCAGCTTTGAACCATTGGGT
TTGGTTGAAGAACCCGAAGGTTTTTGGTGAACTCCAAGGTAAAGGAAATC
AAAAAAGGAAAGGTGGCTAAGTTCCCCCCATGTGTTGGGTTTCTTCTCTT
CAGGCCCATGGCCACCCGCACAGGGAACCGTTAAAAAAAATTTGGCCACA
ACAACTCGGCCCCGAACCCG
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