CK939843

Overview
NameCK939843
Unique NameCK939843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV++L G A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            A+TCGQV++++ PC+ + R  G  P   CCSGVRSLN  ARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV+ L G A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            AI+CGQV +++APCI + R  G  P   CCSGVRSLN  ARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   28 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLN  A+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLN  A+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.167e-26
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            AI+CG V+ +L PC+ +L+ GG  P P CC GV+ LNG ARTT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C+ +R
Sbjct:   26 AISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L   A TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  121 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            V  AITCG V +SL+PC+ +L  GG   PPPCC+GV+ LNG+A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.376e-25
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L   A TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of CK939843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_SOLLC7.387e-2760.82Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_SORBI9.648e-2760.87Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SOLPN9.648e-2760.82Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_MAIZE2.149e-2660.87Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_GOSHI2.149e-2660.64Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI2.149e-2660.64Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_LENCU8.167e-2656.99Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP4_LENCU1.393e-2559.14Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP4_ARATH1.393e-2555.21Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP6_LENCU2.376e-2559.14Non-specific lipid-transfer protein 6 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_G11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939843 ID=CK939843; Name=CK939843; organism=Citrus sinensis; type=EST; length=653bp
AAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCC
CTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGT
GCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTG
ACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTT
TCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGTCGCCA
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTCGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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