CK939843

Overview
NameCK939843
Unique NameCK939843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL   A+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.949e-19
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.949e-19
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            P  + I CG VT++LA C+ +L   G  P   CC GV+SL  +A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            A+ CGQV + + PC+ +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L G  RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            AI C QV   LA C+P+L+ GG  P P CC+G+ SL   A    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  133 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            + CGQV +SLA CIPFL  G   P   CC+GV++L  +A T+ DR+AAC C+K A      IK + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.063e-17
Identity = 50/100 (50.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  118 PVT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            P+T NA+ +CG V  +LA CI +L  G       CC+GV +L  +A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDCS 399
            A++CG+V ++L PC  +L  GG   P P CC+GVR LNG+  TT DR+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
The following BLAST results are available for this feature:
BLAST of CK939843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_AMAHP8.746e-2047.87Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP3_ORYSJ1.949e-1944.57Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.949e-1944.57Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTPC_ARATH4.341e-1946.88Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_HORVU9.670e-1945.65Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP1_HELAN2.154e-1842.39Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPB_ARATH1.824e-1746.74Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTPA_RICCO2.382e-1746.15Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP2_ARATH4.063e-1750.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP7_ARATH1.182e-1644.68Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_G11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939843 ID=CK939843; Name=CK939843; organism=Citrus sinensis; type=EST; length=653bp
AAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCC
CTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGT
GCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTG
ACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTT
TCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGTCGCCA
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTCGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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