CK939843

Overview
NameCK939843
Unique NameCK939843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            AI CG V + + PC+ +++ GG  P   CC GV++L+  AR+  DRQ+ACNCLK     I  +  + A  +P +CGV +PY IS + DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            AI+CG VT SL  C  +L  GG F P  CCSGV+ LN +ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  127 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            +AI+C  V   L PC+ +L +G   PP  CC GV+SL     T+ D++AAC C+K    ++  +KP +A  L S CG  +P   SP+ DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIR--GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            AI+C  V A+L PC+ ++  GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AA LP +CGV++PYKI PST+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  130 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNV---AAGLPSQCGVRIPYKISPSTDCSRVR 408
            A++C  V A L PC+ ++  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV +PYK SPSTDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVR-IPYKISPSTDCSRV 405
            PV  AI+C QV +++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  +   ISP+ DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  133 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 405
            + CGQV  +L+ C+PFL      P   CC+GV  L  +A T  D++ AC C+K A      I+ + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 31/98 (31.63%), Postives = 52/98 (53.06%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRVR 408
            P      CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++     I+   DCS+++
Sbjct:   28 PAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  136 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISP---STDC 396
            TCG V  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  136 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISP---STDCSRV 405
            TCG +  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC  V
Sbjct:    3 TCGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDCKTV 94          
The following BLAST results are available for this feature:
BLAST of CK939843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_WHEAT1.182e-1644.57Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP5_ARATH2.016e-1651.04Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP8_ARATH5.867e-1639.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPA_ARATH7.662e-1641.05Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH1.001e-1542.71Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP_PINTA6.487e-1542.27Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO2.725e-1338.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT21_PARJU4.351e-1131.63Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT13_PARJU7.422e-1135.56Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT11_PARJU9.693e-1134.41Probable non-specific lipid-transfer protein (Frag... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_G11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939843 ID=CK939843; Name=CK939843; organism=Citrus sinensis; type=EST; length=653bp
AAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCC
CTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGT
GCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTG
ACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTT
TCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGTCGCCA
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTCGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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