CK939838

Overview
NameCK939838
Unique NameCK939838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.886e-17
Identity = 52/140 (37.14%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX-----LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+ F  FD+NGDGRIT  EL   L  +G    + I   D    I   D NGDG +D DEF  L                  ++DAF ++  DG   IT   LK ++  LGL + K++D CK MI   D +GDG ++++EF
Sbjct:   67 KRVFQMFDKNGDGRITKEELNDSLENLG----IYIPDKDLTQMIHKIDANGDGCVDIDEFESLYSSIVDEHHNDGETEEEDMKDAFNVFDQDGDGFITVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNYKEF 202          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17
Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+ F  FD+NGDGRIT  EL   L  +G    + +   D    IQ  D NGDG +D +EF  L             +RDAF ++  DG   IT   L  ++T LGL + K+++ CK MI   D +GDG ++++EF
Sbjct:   53 KRVFQMFDKNGDGRITKEELNDSLENLG----IFMPDKDLIQMIQKMDANGDGCVDINEFESLYGSIVEEKEEGD-MRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEF 182          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.871e-16
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +GDG +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +GDG +DF EFL +M            +R+AF ++  DG   I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +GDG +DF EFL +M            +R+AF ++  DG   I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF  FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            LR+AF ++  DG+  I+ A L+ ++T   LGE  S ++   MIR  D++GDG +++EEF
Sbjct:   17 KEAFALFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMISEVDADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMT--NLGEKLSEEEVDEMIREADVDGDGQVNYEEF 145          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+    I   D +G+G +DF EFL +M            +++AF ++  DG+  I+ A L+ ++T   LGE  S D+ + MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELLVMINEVDADGNGTIDFPEFLTMMARKMKDSDSEEEIKEAFKVFDKDGNGYISAAELRHVMT--NLGEKLSEDEVEEMIREADVDGDGQINYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.168e-16
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAA--IQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX-LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            ++ F  FD NGDGRI+ AEL +   +VG       +V D E A  +Q +D +GDG +   EF  +              LR AF ++  DG+  ITPA L R+L   G+GE+ ++  C+ MI   D NGDG+++FEEF
Sbjct:   57 ERVFRKFDANGDGRISRAELAALFRSVGH------AVTDDEVARMMQEADSDGDGYISLGEFAAISAPPPGDAAAAEEDLRHAFGVFDADGNGVITPAELARVLR--GIGEAATVAQCRRMIDGVDRNGDGLINFEEF 186          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.444e-16
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       S A+ E  I   D +G+G +DF EFL +M            +++AF ++  DG+  I+ A L+ ++T   LGE  +  +   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----SQAELEDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMT--NLGEKLTDSEVDEMIREADVDGDGQINYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
The following BLAST results are available for this feature:
BLAST of CK939838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CML5_ARATH2.886e-1737.14Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
CML4_ARATH8.398e-1737.78Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CALM_PYUSP1.871e-1635.56Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALM_RENRE2.444e-1635.56Calmodulin OS=Renilla reniformis PE=1 SV=2[more]
CALM_PATSP2.444e-1635.56Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_CHLRE3.191e-1636.30Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2[more]
CALM_BLAEM3.191e-1634.81Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CML15_ORYSJ4.168e-1638.41Probable calcium-binding protein CML15 OS=Oryza sa... [more]
CALM_AGABI5.444e-1634.81Calmodulin OS=Agaricus bisporus PE=1 SV=2[more]
CALM_XENLA7.110e-1634.81Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_H01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939838 ID=CK939838; Name=CK939838; organism=Citrus sinensis; type=EST; length=856bp
GGGGATAATAAAAAAAAACAATATCATCTTATTCCCTCTTGTCATTTTTG
GAGCAGGTGTATATATATAGCCTTTCGCAGCACACACAGTTGAACAACGT
AACCTTAATTTCGTTCTCATCCATTAGTGGTCCTAATTCCAAAGTTTTGC
GATCAGTTGTTTCTCTTGTTGATTTCATCAAGTGCTAGAGCTGTCATCTC
AGATTCAAAAAAGCCAATCATAATCATGAAGTCTGAGGCCGCTACGGCCC
ATAGCCATGGAGGTAGAGGACAATCTTCTTTTGAAAGATTACGTAGAAAA
TTGTCATTCTCCCCAAAGACAAAGAAGGCAGACAACAAGGAGGGCTCTCT
TTCACTTTCACTTGTCTTAAAGGACGAAACTGAAAGCAGCAGCGGGAGCG
ACGGGGAGCTTCAGAAGAAGGCGTTCAACTTCTTTGACGAGAACGGAGAT
GGAAGGATAACCGCAGCAGAGTTACAGAGCTGTTTAATGACGGTTGGCGG
AGGCGGGGAACTCTCCATCTCCGTGGCTGATGCCGAAGCTGCCATTCAAT
CATCCGATTTAAACGGAGATGGGGTATTGGACTTCGATGAGTTTCTGAAG
CTGATGGAGGGTAATCAGGAGGAGGAGGAGAAGAACTGCGAGCTCAGGGA
TGCTTTTGCGCTCTACGTCATGGATGGTTCCAATAGCATCACCCCGGCTA
GTCTCAAGAGGATGCTTACCCGTCTGGGTCTCGGTGAGTCCAAGTCCATT
GATGACTGTAAAGCTATGATCAGACCCTTTGATATCAACGGTGATGGCGT
CCTCAGCTTTGAAGAGTTCTCTTTAATGATGCACTAATTCTAGCTATTAT
TTCTCT
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