CK939838

Overview
NameCK939838
Unique NameCK939838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALMA_ARBPU (Calmodulin-alpha (Fragment) OS=Arbacia punctulata PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  424 FNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            F  FD NGDG+I++ EL + + ++G      +   + E AI   D  GDG ++F+EF++L             L+DAF++Y +DG+ SI+   L  +L    LG+  SI +C+ MI   D +GDG + FEEF
Sbjct:   42 FKKFDVNGDGKISSKELGAIMTSLGH----EVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLR--SLGDECSIAECRKMIGGVDKDGDGTIDFEEF 167          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM2_BRALA (Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   M+R  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMVREADIDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF  FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + D+   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFALFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMT--NLGEKLTDDEVDEMIREADIDGDGHINYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 52/140 (37.14%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX----LRDAFALYVMD-GSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            ++ F+ FD +GDG+I+A EL+    +VG      IS   A+ AI   D + DG L F++F+ LM                L+ AF ++ ++ GS  ITP  L++ML +LG  ES++  +C+AMI+ +DI+G+G+L F EF
Sbjct:   66 RQVFSHFDSDGDGKISAFELRHYFGSVGE----YISHEAAQEAINEVDTDADGSLGFEDFVGLMTRRDLYGDGEVDGDGELKTAFEMFEVEKGSGCITPKGLQKMLVKLG--ESRTYGECEAMIKFYDIDGNGILDFHEF 199          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_TRYCR (Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G G +DF EFL LM            +++AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
The following BLAST results are available for this feature:
BLAST of CK939838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CALMA_HALRO7.110e-1634.81Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]
CALMA_ARBPU7.110e-1634.81Calmodulin-alpha (Fragment) OS=Arbacia punctulata ... [more]
CALM1_BRALA7.110e-1634.81Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]
CALM1_BRAFL7.110e-1634.81Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CML25_ARATH9.285e-1636.36Probable calcium-binding protein CML25 OS=Arabidop... [more]
CALM_CIOIN9.285e-1634.07Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM2_BRALA9.285e-1634.07Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 ... [more]
CALM_PARTE1.213e-1536.30Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CML41_ARATH1.584e-1537.14Probable calcium-binding protein CML41 OS=Arabidop... [more]
CALM_TRYCR1.584e-1534.07Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_H01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939838 ID=CK939838; Name=CK939838; organism=Citrus sinensis; type=EST; length=856bp
GGGGATAATAAAAAAAAACAATATCATCTTATTCCCTCTTGTCATTTTTG
GAGCAGGTGTATATATATAGCCTTTCGCAGCACACACAGTTGAACAACGT
AACCTTAATTTCGTTCTCATCCATTAGTGGTCCTAATTCCAAAGTTTTGC
GATCAGTTGTTTCTCTTGTTGATTTCATCAAGTGCTAGAGCTGTCATCTC
AGATTCAAAAAAGCCAATCATAATCATGAAGTCTGAGGCCGCTACGGCCC
ATAGCCATGGAGGTAGAGGACAATCTTCTTTTGAAAGATTACGTAGAAAA
TTGTCATTCTCCCCAAAGACAAAGAAGGCAGACAACAAGGAGGGCTCTCT
TTCACTTTCACTTGTCTTAAAGGACGAAACTGAAAGCAGCAGCGGGAGCG
ACGGGGAGCTTCAGAAGAAGGCGTTCAACTTCTTTGACGAGAACGGAGAT
GGAAGGATAACCGCAGCAGAGTTACAGAGCTGTTTAATGACGGTTGGCGG
AGGCGGGGAACTCTCCATCTCCGTGGCTGATGCCGAAGCTGCCATTCAAT
CATCCGATTTAAACGGAGATGGGGTATTGGACTTCGATGAGTTTCTGAAG
CTGATGGAGGGTAATCAGGAGGAGGAGGAGAAGAACTGCGAGCTCAGGGA
TGCTTTTGCGCTCTACGTCATGGATGGTTCCAATAGCATCACCCCGGCTA
GTCTCAAGAGGATGCTTACCCGTCTGGGTCTCGGTGAGTCCAAGTCCATT
GATGACTGTAAAGCTATGATCAGACCCTTTGATATCAACGGTGATGGCGT
CCTCAGCTTTGAAGAGTTCTCTTTAATGATGCACTAATTCTAGCTATTAT
TTCTCT
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