CK939838

Overview
NameCK939838
Unique NameCK939838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_TRYBG (Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G G +DF EFL LM            +++AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_TRYBB (Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G G +DF EFL LM            +++AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGHINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PLECO (Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +++AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMT--NLGEKLTDNEVDEMIREADIDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_EUGGR (Calmodulin OS=Euglena gracilis PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G G +DF EFL LM            +++AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDQDGSGTIDFPEFLTLMSRKMHDTDTEEEIKEAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELVEAFKVFDRDGNGLISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGHINYEEF 142
The following BLAST results are available for this feature:
BLAST of CK939838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CALM_TRYBG1.584e-1534.07Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV... [more]
CALM_TRYBB1.584e-1534.07Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2[more]
CALM_TETPY1.584e-1535.56Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4[more]
CALM_PROMN1.584e-1534.81Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PLECO1.584e-1534.07Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 S... [more]
CALM_PFIPI1.584e-1534.81Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_KARMI1.584e-1534.81Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]
CALM_EUGGR1.584e-1534.07Calmodulin OS=Euglena gracilis PE=1 SV=2[more]
CALM_ALEFU1.584e-1534.81Calmodulin OS=Alexandrium fundyense PE=2 SV=1[more]
CALM_STYLE2.069e-1534.81Calmodulin OS=Stylonychia lemnae PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_H01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939838 ID=CK939838; Name=CK939838; organism=Citrus sinensis; type=EST; length=856bp
GGGGATAATAAAAAAAAACAATATCATCTTATTCCCTCTTGTCATTTTTG
GAGCAGGTGTATATATATAGCCTTTCGCAGCACACACAGTTGAACAACGT
AACCTTAATTTCGTTCTCATCCATTAGTGGTCCTAATTCCAAAGTTTTGC
GATCAGTTGTTTCTCTTGTTGATTTCATCAAGTGCTAGAGCTGTCATCTC
AGATTCAAAAAAGCCAATCATAATCATGAAGTCTGAGGCCGCTACGGCCC
ATAGCCATGGAGGTAGAGGACAATCTTCTTTTGAAAGATTACGTAGAAAA
TTGTCATTCTCCCCAAAGACAAAGAAGGCAGACAACAAGGAGGGCTCTCT
TTCACTTTCACTTGTCTTAAAGGACGAAACTGAAAGCAGCAGCGGGAGCG
ACGGGGAGCTTCAGAAGAAGGCGTTCAACTTCTTTGACGAGAACGGAGAT
GGAAGGATAACCGCAGCAGAGTTACAGAGCTGTTTAATGACGGTTGGCGG
AGGCGGGGAACTCTCCATCTCCGTGGCTGATGCCGAAGCTGCCATTCAAT
CATCCGATTTAAACGGAGATGGGGTATTGGACTTCGATGAGTTTCTGAAG
CTGATGGAGGGTAATCAGGAGGAGGAGGAGAAGAACTGCGAGCTCAGGGA
TGCTTTTGCGCTCTACGTCATGGATGGTTCCAATAGCATCACCCCGGCTA
GTCTCAAGAGGATGCTTACCCGTCTGGGTCTCGGTGAGTCCAAGTCCATT
GATGACTGTAAAGCTATGATCAGACCCTTTGATATCAACGGTGATGGCGT
CCTCAGCTTTGAAGAGTTCTCTTTAATGATGCACTAATTCTAGCTATTAT
TTCTCT
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