CK939838

Overview
NameCK939838
Unique NameCK939838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL   + ++G       + A+ +  +   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDGV+ + EF
Sbjct:   16 KEAFSLFDKDGDGSITTKELGIVMRSLGQNP----TEAELQDMVNEVDADGNGTIDFPEFLAMMARKMKDVDSEEEIREAFKVFDKDGNGIISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGVIDYSEF 144
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PLEOS (Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 45/135 (33.33%), Postives = 78/135 (57.78%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +++AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMT--NLGEKLTDNEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 45/135 (33.33%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K AF+ FD +GDG+IT+ EL+S + ++G     + S A+ E  I+  D +G+G +++ EF+++M            +R+AF ++  DG+  IT A L++++      E  + ++   MIR  DI+GDG++++EEF
Sbjct:   13 KDAFDMFDIDGDGQITSKELRSVMKSLGR----TPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEKEMREAFRVFDKDGNGLITAAELRQVMANFS-DEKLTSEEISEMIREADIDGDGMVNYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  D +GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADTDGDGQVNYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + +    MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRYVMT--NLGEKLTDEXVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_MYXGL (Calmodulin OS=Myxine glutinosa PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   + +G+G +DF EFL +M            +R+AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVNADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_FAGSY (Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L++AF ++  D +  I+ A L+ ++T LG    K  D+   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNP----TEAELQDMINEVDRDGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG---EKLTDEVDEMIREADVDGDGQINYEEF 141
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM6_ARATH (Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L++AF ++  D +  I+ A L+ ++T   LGE  S ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMT--NLGEKLSDEEVDEMIREADVDGDGQINYEEF 142
[Close]
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALN_CHICK (Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  D +  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:    3 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDSNGYISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEF 131
The following BLAST results are available for this feature:
BLAST of CK939838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CALM_PNECA2.069e-1533.33Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
CALM_PLEOS2.069e-1533.33Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=... [more]
CALM_HETTR2.069e-1534.81Calmodulin OS=Heterocapsa triquetra PE=2 SV=1[more]
CABO_LOLPE2.069e-1533.33Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CALM_SUBDO2.702e-1534.07Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_OREMO2.702e-1534.81Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CALM_MYXGL2.702e-1534.07Calmodulin OS=Myxine glutinosa PE=2 SV=3[more]
CALM_FAGSY2.702e-1534.81Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3[more]
CALM6_ARATH2.702e-1534.81Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 ... [more]
CALN_CHICK3.528e-1534.07Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_H01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939838 ID=CK939838; Name=CK939838; organism=Citrus sinensis; type=EST; length=856bp
GGGGATAATAAAAAAAAACAATATCATCTTATTCCCTCTTGTCATTTTTG
GAGCAGGTGTATATATATAGCCTTTCGCAGCACACACAGTTGAACAACGT
AACCTTAATTTCGTTCTCATCCATTAGTGGTCCTAATTCCAAAGTTTTGC
GATCAGTTGTTTCTCTTGTTGATTTCATCAAGTGCTAGAGCTGTCATCTC
AGATTCAAAAAAGCCAATCATAATCATGAAGTCTGAGGCCGCTACGGCCC
ATAGCCATGGAGGTAGAGGACAATCTTCTTTTGAAAGATTACGTAGAAAA
TTGTCATTCTCCCCAAAGACAAAGAAGGCAGACAACAAGGAGGGCTCTCT
TTCACTTTCACTTGTCTTAAAGGACGAAACTGAAAGCAGCAGCGGGAGCG
ACGGGGAGCTTCAGAAGAAGGCGTTCAACTTCTTTGACGAGAACGGAGAT
GGAAGGATAACCGCAGCAGAGTTACAGAGCTGTTTAATGACGGTTGGCGG
AGGCGGGGAACTCTCCATCTCCGTGGCTGATGCCGAAGCTGCCATTCAAT
CATCCGATTTAAACGGAGATGGGGTATTGGACTTCGATGAGTTTCTGAAG
CTGATGGAGGGTAATCAGGAGGAGGAGGAGAAGAACTGCGAGCTCAGGGA
TGCTTTTGCGCTCTACGTCATGGATGGTTCCAATAGCATCACCCCGGCTA
GTCTCAAGAGGATGCTTACCCGTCTGGGTCTCGGTGAGTCCAAGTCCATT
GATGACTGTAAAGCTATGATCAGACCCTTTGATATCAACGGTGATGGCGT
CCTCAGCTTTGAAGAGTTCTCTTTAATGATGCACTAATTCTAGCTATTAT
TTCTCT
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