CK939838

Overview
NameCK939838
Unique NameCK939838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEFS 822
            ++AF+ FD + DG IT+ EL   + ++G     S + A+ +  I   D +G+G +DF EFL +M            +R+AF ++  DG+  IT   L  +LT   LGE  S ++   MIR  D +GDGV+++EEFS
Sbjct:   15 REAFSLFDRDQDGNITSNELGVVMRSLGQ----SPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLT--SLGERLSQEEVADMIREADTDGDGVINYEEFS 144          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PYTSP (Calmodulin OS=Pythium splendens PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            + +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMT--NLGEKLTDEEVDEMIREADIDGDGQINYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_PHYIN (Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            + +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMT--NLGEKLTDEEVDEMIREADIDGDGQINYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L++AF ++  D +  I+ A L+ ++T   LGE  + ++ + MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMT--NLGEKLTDEEVEEMIREADVDGDGQINYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALL3_MOUSE (Calmodulin-like protein 3 OS=Mus musculus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 44/135 (32.59%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  +   D +G+G +DF EFL +M            +R+AF ++  DG+  ++ A L+ ++T+  LGE  S ++   MI+  D +GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGSITTQELGTVMRSLGQNP----TEAELQGMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTK--LGEKLSDEEVDEMIQAADTDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKL----MXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            KK F  FD+NGDG+I+  EL+  +  +      + S  +    ++  DL+G+G +D DEF+ L    +            L++AF LY +DG+  I+   L  ++  LG  E  S+ DCK MI   DI+GDG ++F+EF
Sbjct:   19 KKVFQRFDKNGDGKISVDELKEVIRALSP----TASPEETVTMMKQFDLDGNGFIDLDEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLG--EKCSVQDCKKMISKVDIDGDGCVNFDEF 151          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_MACPY (Calmodulin OS=Macrocystis pyrifera PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL +M            + +AF ++  DG+  I+ A L+ ++T   LGE  + ++   MIR  DI+GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDGNGFISAAELRHIMT--NLGEKLTDEEVDEMIREADIDGDGQINYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALL3_RAT (Calmodulin-like protein 3 OS=Rattus norvegicus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 45/135 (33.33%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  +   D +G+G +DF EFL +M            +R+AF ++  DG+  ++ A L+ ++TR  LGE  S ++   MI+  D +GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGCITTQELGTVMRSLGQNP----TEAELQDMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTR--LGEKLSDEEVDEMIQAADTDGDGQVNYEEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGG---ELSISVADAEAAIQSSDLNGDGVLDFDEFLKL-MXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            ++ F  FD NGDGRI+ +EL +   ++G      EL+  +A+A+A       +GDG +  DEF  L              LR AF ++  DG+ +I+ A L R+L   GLGE  ++  C+ MI   D NGDG++SFEEF
Sbjct:   42 ERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADA-------DGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLH--GLGEKATVQQCRRMIEGVDQNGDGLISFEEF 171          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+AF+ FD++GDG IT  EL + + ++G       + A+ +  I   D +G+G +DF EFL LM            L++AF ++  D +  I+ A L+ ++T   LGE  + ++   MIR  D++GDG +++EEF
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
The following BLAST results are available for this feature:
BLAST of CK939838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CALM_SCHPO3.528e-1536.03Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
CALM_PYTSP3.528e-1534.07Calmodulin OS=Pythium splendens PE=2 SV=1[more]
CALM_PHYIN3.528e-1534.07Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 ... [more]
CALM1_ARATH3.528e-1534.07Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CALL3_MOUSE3.528e-1532.59Calmodulin-like protein 3 OS=Mus musculus GN=Calml... [more]
CML24_ARATH4.608e-1534.53Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CALM_MACPY4.608e-1534.07Calmodulin OS=Macrocystis pyrifera PE=2 SV=3[more]
CALL3_RAT4.608e-1533.33Calmodulin-like protein 3 OS=Rattus norvegicus GN=... [more]
CML10_ORYSJ6.019e-1537.41Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CALM_SPIOL6.019e-1534.07Calmodulin OS=Spinacia oleracea PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_H01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939838 ID=CK939838; Name=CK939838; organism=Citrus sinensis; type=EST; length=856bp
GGGGATAATAAAAAAAAACAATATCATCTTATTCCCTCTTGTCATTTTTG
GAGCAGGTGTATATATATAGCCTTTCGCAGCACACACAGTTGAACAACGT
AACCTTAATTTCGTTCTCATCCATTAGTGGTCCTAATTCCAAAGTTTTGC
GATCAGTTGTTTCTCTTGTTGATTTCATCAAGTGCTAGAGCTGTCATCTC
AGATTCAAAAAAGCCAATCATAATCATGAAGTCTGAGGCCGCTACGGCCC
ATAGCCATGGAGGTAGAGGACAATCTTCTTTTGAAAGATTACGTAGAAAA
TTGTCATTCTCCCCAAAGACAAAGAAGGCAGACAACAAGGAGGGCTCTCT
TTCACTTTCACTTGTCTTAAAGGACGAAACTGAAAGCAGCAGCGGGAGCG
ACGGGGAGCTTCAGAAGAAGGCGTTCAACTTCTTTGACGAGAACGGAGAT
GGAAGGATAACCGCAGCAGAGTTACAGAGCTGTTTAATGACGGTTGGCGG
AGGCGGGGAACTCTCCATCTCCGTGGCTGATGCCGAAGCTGCCATTCAAT
CATCCGATTTAAACGGAGATGGGGTATTGGACTTCGATGAGTTTCTGAAG
CTGATGGAGGGTAATCAGGAGGAGGAGGAGAAGAACTGCGAGCTCAGGGA
TGCTTTTGCGCTCTACGTCATGGATGGTTCCAATAGCATCACCCCGGCTA
GTCTCAAGAGGATGCTTACCCGTCTGGGTCTCGGTGAGTCCAAGTCCATT
GATGACTGTAAAGCTATGATCAGACCCTTTGATATCAACGGTGATGGCGT
CCTCAGCTTTGAAGAGTTCTCTTTAATGATGCACTAATTCTAGCTATTAT
TTCTCT
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