CK939837

Overview
NameCK939837
Unique NameCK939837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 88/145 (60.69%), Postives = 113/145 (77.93%), Query Frame = 2
Query:  209 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYA 643
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 88/145 (60.69%), Postives = 113/145 (77.93%), Query Frame = 2
Query:  209 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYA 643
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 88/145 (60.69%), Postives = 113/145 (77.93%), Query Frame = 2
Query:  209 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYA 643
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.381e-40
Identity = 69/145 (47.59%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  209 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYA 643
            + KRI +E+ +L  DPP  CSAGP  ++++HW ATI+GPS +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y +D+ K++  A+ WT ++A
Sbjct:   37 SGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.183e-37
Identity = 75/145 (51.72%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  215 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            +RI+KE + L  +P    SA P  E+M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KS++A+   TA+ WTR YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.429e-37
Identity = 73/146 (50.00%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  209 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYA 643
            A KR+ KE+ D+ K PP+ CSA  V +++  W+AT+ GP  SP+  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +K+D+  +  TA+ WT+KYA
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.090e-37
Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  215 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KS++A+   TA+ WTR YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.579e-36
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 2
Query:  269 SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYA 643
            S G  + +++ W A I GP  +PY GG+F ++I FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K+++ +++  AR +T ++A
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.746e-35
Identity = 68/133 (51.13%), Postives = 89/133 (66.92%), Query Frame = 2
Query:  209 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 607
            A KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  +K +Y
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.281e-35
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  215 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAM 646
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WTR YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
The following BLAST results are available for this feature:
BLAST of CK939837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2E3_MOUSE2.349e-4860.69Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN2.349e-4860.69Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN2.349e-4860.69Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
COP10_ARATH1.381e-4047.59Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC36_ARATH3.183e-3751.72Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBCB_DICDI5.429e-3750.00Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC35_ARATH7.090e-3751.03Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC31_ARATH1.579e-3652.00Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC3_ARATH1.746e-3551.13Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2N_MACFA2.281e-3547.92Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004744_G12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939837 ID=CK939837; Name=CK939837; organism=Citrus sinensis; type=EST; length=841bp
GGGGTTTCTCGACGATATTTGTGTTGAAGAACAACGAAGCAAGGGGTTGA
TAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTT
TCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGT
TTCGCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAA
GAGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAG
GATCCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCA
CTGGCAAGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTG
TATTTTTAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCA
AAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGG
AAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCA
TTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCT
GACGACCCTCTTGTACCGGAGATTGCCCACATGTACAAGTCCGACAAGGC
CAAATATGAATCCACGGCCAGGAGCTGGACACGGAAGTATGCCATGGGAT
GAAGGTTGTTAGGATATTGCAGAAAAAGGAACACATTTATTGAAATATGT
TGTGTGTGTTGTCTATCTATTTTCTTTAACTTGCTTTGGGGAGGGCAGAC
GTTGGTGTTTTAGAATGGTGTTGGGAGTTACAAGGGCGGGACGTTTTTAT
GTTAATGTTGAATGTTTGTGTTTGAAGCTCCTTTGATGGAA
back to top