CK939835

Overview
NameCK939835
Unique NameCK939835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 3
Query:   72 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 446
            FKRYVE+GRV LV  G+  GKL VIVD++D   AL+D+P  +  R  + +  + LT I + + R  R   + +  +  DV NKW +S+W +KL  +K R+ LNDFDRF +M  K ++   V   +AK
Sbjct:    4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAK 130          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14B_YEAST (60S ribosomal protein L14-B OS=Saccharomyces cerevisiae GN=RPL14B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 47/125 (37.60%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   78 RYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 446
            R VE+GRV L+  G+  GKL  IV+++DQ   L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_DROME (60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA*NFSRV 485
            MPF+R+V+ GR+A  + G   G+LV IVDV+DQN  LVD P   + R +     L LT  +I        + + +A  ++D+K +W+ S W  K     +R++LNDFDRFKL  AK ++  L+      LK+   A    RV
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKADGTPRV 142          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14A_YEAST (60S ribosomal protein L14-A OS=Saccharomyces cerevisiae GN=RPL14A PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 47/125 (37.60%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   78 RYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 446
            R VE+GRV L+  G+  GKL  IV+++DQ   L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_DICDI (60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 3
Query:   72 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKL 449
            F  +VEIGRV ++NYG+   K  VI+DVLDQN ALV  P   + R  +NFK ++LT +K++I R  R  +LI A++ AD++ K    S  +K+  +  ++   DF+RFK  L + K    V  E+ KL
Sbjct:    5 FSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWINLTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIRRKLNKKVSGEVKKL 132          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_DROVI (60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA*NFSRV 485
            MPF+R+V+ GR+A  + G   G+LV IVDV+DQN  LVD P   + R +     L LT  +I        + + +A   +D+K +W+ S W  K     +R+ LNDFDRFKL  AK ++  L+      LK+   +    R+
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSDLKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKSDGTPRI 142          
The following BLAST results are available for this feature:
BLAST of CK939835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL14_SCHPO2.776e-1941.7360S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14B_YEAST3.393e-1737.6060S ribosomal protein L14-B OS=Saccharomyces cerev... [more]
RL14_DROME4.431e-1737.3260S ribosomal protein L14 OS=Drosophila melanogast... [more]
RL14A_YEAST4.431e-1737.6060S ribosomal protein L14-A OS=Saccharomyces cerev... [more]
RL14_DICDI1.289e-1640.6360S ribosomal protein L14 OS=Dictyostelium discoid... [more]
RL14_DROVI4.899e-1635.9260S ribosomal protein L14 OS=Drosophila virilis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004745_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939835 ID=CK939835; Name=CK939835; organism=Citrus sinensis; type=EST; length=688bp
GGGGGCCTCTTGCCTCATTCATTCATCTCCTCGCTCCTCCGGCAGAGCCT
TGAATATCTTCGAAAATGCCGTTCAAGAGGTACGTGGAGATAGGAAGAGT
TGCTCTCGTTAATTACGGGAAGGACTATGGGAAGCTTGTGGTCATCGTCG
ATGTCCTTGATCAAAACGGGGCTCTTGTTGATGCCCCTGATATGGTGAGG
AGCCAAATGAACTTCAAGAGGCTTTCTCTCACGGATATTAAGATTGACAT
CAATCGAGTTCCCAGGAAGAAGTCTTTGATTGAAGCCATGGAGAAGGCTG
ATGTGAAGAACAAATGGGAAAACAGCTCCTGGGGCAGGAAGCTGATTGTC
CAGAAAAGGAGAGCGGCACTGAATGATTTTGATAGGTTCAAGCTCATGTT
GGCCAAGATCAAGAAGGGTGGACTTGTTCGACAGGAGCTTGCAAAACTCA
AGAGGGAGAATGCAGCATAGAATTTCTCTCGTGTTCCCCTTTCTGGTTTT
TAGTTCTTACAGCTTCAATTTGATTCTATTAATGTATTGATTAATATGAG
AAAACATCAGCTTGGCGTTTTTGGGTTAATTGTTATTTGGACAGAATTTT
TAGATATTTTCGTAATGTCCTTTCTGTTATAATCTGATCTCAAGCTTTGT
TGTTCGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top